Difference between revisions of "SJ20035"
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(Created page with "Category:gene == Gene SJ11729 == * transcription-direction: ** negative * right-end-position: ** 220237 * left-end-position: ** 210102 * centisome-position: ** 56.948704...") |
(Created page with "Category:gene == Gene SJ09511 == * transcription-direction: ** positive * right-end-position: ** 32275 * left-end-position: ** 20012 * centisome-position: ** 49.73903...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ09511 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 32275 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 20012 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 49.73903 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[3.1.1.47-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | * [[ASPARAGHYD-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[RXN- | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[GLUTAMIN-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[LYSOPHOSPHOLIPASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[RXN- | + | * [[RXN-15035]] |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[ASPARAGINE-DEG1-PWY-1]] |
| − | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
| − | * [[PWY- | + | * [[ASPASN-PWY]] |
| − | ** ''' | + | ** '''4''' reactions found over '''2''' reactions in the full pathway |
| − | * [[PWY | + | * [[ASPARAGINE-DEG1-PWY]] |
| − | ** ''' | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
| − | * [[PWY- | + | * [[CITRULBIO-PWY]] |
| − | ** ''' | + | ** '''7''' reactions found over '''8''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[GLUTAMINDEG-PWY]] |
| − | {{#set: right-end-position= | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PWY-7409]] |
| − | {{#set: centisome-position= | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=32275}} | ||
| + | {{#set: left-end-position=20012}} | ||
| + | {{#set: centisome-position=49.73903 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
Revision as of 08:14, 15 March 2021
Contents
Gene SJ09511
- transcription-direction:
- positive
- right-end-position:
- 32275
- left-end-position:
- 20012
- centisome-position:
- 49.73903
Organism(s) associated with this gene
Reaction(s) associated
- 3.1.1.47-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- ASPARAGHYD-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- GLUTAMIN-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- LYSOPHOSPHOLIPASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-15035
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- ASPARAGINE-DEG1-PWY-1
- 3 reactions found over 3 reactions in the full pathway
- ASPASN-PWY
- 4 reactions found over 2 reactions in the full pathway
- ASPARAGINE-DEG1-PWY
- 1 reactions found over 1 reactions in the full pathway
- CITRULBIO-PWY
- 7 reactions found over 8 reactions in the full pathway
- GLUTAMINDEG-PWY
- 1 reactions found over 1 reactions in the full pathway
- PWY-7409
- 4 reactions found over 4 reactions in the full pathway
