Difference between revisions of "SJ20108"

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(Created page with "Category:gene == Gene SJ02910 == * transcription-direction: ** positive * right-end-position: ** 195815 * left-end-position: ** 180581 * centisome-position: ** 34.00202...")
(Created page with "Category:gene == Gene SJ02539 == * transcription-direction: ** negative * right-end-position: ** 79779 * left-end-position: ** 73571 * centisome-position: ** 55.13662...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ02910 ==
+
== Gene SJ02539 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 195815
+
** 79779
 
* left-end-position:
 
* left-end-position:
−
** 180581
+
** 73571
 
* centisome-position:
 
* centisome-position:
−
** 34.00202    
+
** 55.13662    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[GLYCINE-N-METHYLTRANSFERASE-RXN]]
−
* [[2.7.8.15-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-13404]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[2.7.8.17-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PHOSNACMURPENTATRANS-RXN]]
+
* [[RXN-13405]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-13406]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-11347]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-9679]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
* [[RXN-8975]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9680]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]]
+
* [[P541-PWY]]
−
** '''16''' reactions found over '''19''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PEPTIDOGLYCANSYN-PWY]]
+
* [[PWY-6004]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6470]]
+
{{#set: transcription-direction=negative}}
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
{{#set: right-end-position=79779}}
−
* [[PWY-6471]]
+
{{#set: left-end-position=73571}}
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
{{#set: centisome-position=55.13662   }}
−
* [[PWY-5265]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=195815}}
 
−
{{#set: left-end-position=180581}}
 
−
{{#set: centisome-position=34.00202   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=6}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=2}}

Revision as of 13:04, 14 January 2021

Gene SJ02539

  • transcription-direction:
    • negative
  • right-end-position:
    • 79779
  • left-end-position:
    • 73571
  • centisome-position:
    • 55.13662

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • P541-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6004
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ20108&oldid=83208"