Difference between revisions of "SJ20125"

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(Created page with "Category:gene == Gene SJ06894 == * transcription-direction: ** negative * right-end-position: ** 119022 * left-end-position: ** 110310 * centisome-position: ** 23.53968...")
(Created page with "Category:gene == Gene SJ11913 == * transcription-direction: ** positive * right-end-position: ** 389858 * left-end-position: ** 374707 * centisome-position: ** 48.454765...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ06894 ==
+
== Gene SJ11913 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 119022
+
** 389858
 
* left-end-position:
 
* left-end-position:
−
** 110310
+
** 374707
 
* centisome-position:
 
* centisome-position:
−
** 23.53968    
+
** 48.454765    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[3.6.4.5-RXN]]
+
* [[G6PADH]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[ATPASE-RXN]]
+
* [[G6PADHh]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
* [[G6PBDH]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-12195]]
+
* [[G6PBDHh]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-12196]]
+
* [[GLU6PDEHYDROG-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN0-5462]]
+
* [[RXN-14819]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7210]]
+
* [[PWY-7268]]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7198]]
+
* [[P122-PWY]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''16''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-7184]]
+
* [[GLYCOLYSIS-E-D]]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6545]]
+
* [[OXIDATIVEPENT-PWY]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[RUMP-PWY]]
−
{{#set: right-end-position=119022}}
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
{{#set: left-end-position=110310}}
+
{{#set: transcription-direction=positive}}
−
{{#set: centisome-position=23.53968   }}
+
{{#set: right-end-position=389858}}
 +
{{#set: left-end-position=374707}}
 +
{{#set: centisome-position=48.454765   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=6}}
 
{{#set: nb reaction associated=6}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=5}}

Revision as of 15:24, 5 January 2021

Gene SJ11913

  • transcription-direction:
    • positive
  • right-end-position:
    • 389858
  • left-end-position:
    • 374707
  • centisome-position:
    • 48.454765

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7268
    • 4 reactions found over 5 reactions in the full pathway
  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • GLYCOLYSIS-E-D
    • 4 reactions found over 2 reactions in the full pathway
  • OXIDATIVEPENT-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • RUMP-PWY
    • 4 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ20125&oldid=71246"