Difference between revisions of "SJ20190"

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(Created page with "Category:gene == Gene SJ01012 == * transcription-direction: ** positive * right-end-position: ** 17442 * left-end-position: ** 647 * centisome-position: ** 0.40875638...")
(Created page with "Category:gene == Gene SJ20190 == * transcription-direction: ** negative * right-end-position: ** 126495 * left-end-position: ** 116103 * centisome-position: ** 54.946995...")
 
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ01012 ==
+
== Gene SJ20190 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 17442
+
** 126495
 
* left-end-position:
 
* left-end-position:
−
** 647
+
** 116103
 
* centisome-position:
 
* centisome-position:
−
** 0.40875638    
+
** 54.946995    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[RXN-14971]]
+
* [[GLUTAMATE-SYNTHASE-NADH-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[GLUTAMATESYN-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-15378]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[GLUTAMIN-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[GLUTDEHYD-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[SUCDH_LPAREN_q8_RPAREN_m]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-6969]]
+
* [[PWY-6963]]
−
** '''10''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-5690]]
+
* [[GLUGLNSYN-PWY]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[P105-PWY]]
+
* [[GLUTSYN-PWY]]
−
** '''10''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[TCA]]
+
* [[GLUTAMINEFUM-PWY]]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-7254]]
+
* [[CITRULBIO-PWY]]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-561]]
+
* [[GLUTAMINDEG-PWY]]
−
** '''6''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-6728]]
+
* [[GLUTSYNIII-PWY]]
−
** '''11''' reactions found over '''19''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-3781]]
+
* [[PWY-5675]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7279]]
 
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY0-1353]]
+
* [[PWY490-3]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY66-398]]
+
* [[PWY-5913]]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''10''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-4302]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY0-1329]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
</div>
 
</div>
−
{{#set: transcription-direction=positive}}
+
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=17442}}
+
{{#set: right-end-position=126495}}
−
{{#set: left-end-position=647}}
+
{{#set: left-end-position=116103}}
−
{{#set: centisome-position=0.40875638   }}
+
{{#set: centisome-position=54.946995   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=4}}
 
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=13}}
+
{{#set: nb pathway associated=10}}

Latest revision as of 11:06, 18 March 2021

Gene SJ20190

  • transcription-direction:
    • negative
  • right-end-position:
    • 126495
  • left-end-position:
    • 116103
  • centisome-position:
    • 54.946995

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6963
    • 4 reactions found over 2 reactions in the full pathway
  • GLUGLNSYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTSYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • GLUTAMINEFUM-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway
  • GLUTAMINDEG-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTSYNIII-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5675
    • 4 reactions found over 4 reactions in the full pathway
  • PWY490-3
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 8 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ20190&oldid=134226"