Difference between revisions of "SJ20230"

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(Created page with "Category:gene == Gene SJ04988 == * transcription-direction: ** positive * right-end-position: ** 752127 * left-end-position: ** 742970 * centisome-position: ** 76.94116...")
(Created page with "Category:gene == Gene SJ20230 == * transcription-direction: ** negative * right-end-position: ** 145572 * left-end-position: ** 115658 * centisome-position: ** 54.763092...")
 
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[[Category:gene]]
 
[[Category:gene]]
== Gene SJ04988 ==
+
== Gene SJ20230 ==
 
* transcription-direction:
 
* transcription-direction:
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
** 752127
+
** 145572
 
* left-end-position:
 
* left-end-position:
** 742970
+
** 115658
 
* centisome-position:
 
* centisome-position:
** 76.94116    
+
** 54.763092    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PROTEIN-KINASE-RXN]]
* [[3.1.1.64-RXN]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[CARBOXYLESTERASE-RXN]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[PHENYLALANINE--TRNA-LIGASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
* [[RETINYL-PALMITATE-ESTERASE-RXN]]
+
{{#set: transcription-direction=negative}}
** Category: [[annotation]]
+
{{#set: right-end-position=145572}}
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
{{#set: left-end-position=115658}}
* [[RXN-10711]]
+
{{#set: centisome-position=54.763092   }}
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN-10767]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN-12252]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN-12575]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXNQT-4366]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
== Pathway(s) associated ==
 
* [[TRNA-CHARGING-PWY]]
 
** '''21''' reactions found over '''21''' reactions in the full pathway
 
* [[PWY-6303]]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
* [[PWY-6857]]
 
** '''3''' reactions found over '''7''' reactions in the full pathway
 
{{#set: transcription-direction=positive}}
 
{{#set: right-end-position=752127}}
 
{{#set: left-end-position=742970}}
 
{{#set: centisome-position=76.94116   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
{{#set: nb reaction associated=9}}
+
{{#set: nb reaction associated=1}}
{{#set: nb pathway associated=3}}
 

Latest revision as of 11:05, 18 March 2021

Gene SJ20230

  • transcription-direction:
    • negative
  • right-end-position:
    • 145572
  • left-end-position:
    • 115658
  • centisome-position:
    • 54.763092

Organism(s) associated with this gene

Reaction(s) associated