Difference between revisions of "SJ20332"

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(Created page with "Category:gene == Gene SJ04949 == * transcription-direction: ** negative * right-end-position: ** 189145 * left-end-position: ** 177283 * centisome-position: ** 18.359234...")
(Created page with "Category:gene == Gene SJ18193 == * transcription-direction: ** positive * right-end-position: ** 90846 * left-end-position: ** 81810 * centisome-position: ** 32.544872...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ04949 ==
+
== Gene SJ18193 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 189145
+
** 90846
 
* left-end-position:
 
* left-end-position:
−
** 177283
+
** 81810
 
* centisome-position:
 
* centisome-position:
−
** 18.359234    
+
** 32.544872    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[SHIKIMATE-KINASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[GTPOP]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PEPDEPHOS-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14117]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14192]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14207]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6163]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''6''' reactions found over '''5''' reactions in the full pathway
+
* [[P122-PWY]]
−
{{#set: transcription-direction=negative}}
+
** '''16''' reactions found over '''18''' reactions in the full pathway
−
{{#set: right-end-position=189145}}
+
* [[PWY-5484]]
−
{{#set: left-end-position=177283}}
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
{{#set: centisome-position=18.359234   }}
+
* [[P124-PWY]]
 +
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-1042]]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[P341-PWY]]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7003]]
 +
** '''8''' reactions found over '''6''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]]
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-6886]]
 +
** '''8''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7218]]
 +
** '''7''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5723]]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-2221]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7383]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6901]]
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6142]]
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[NPGLUCAT-PWY]]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=90846}}
 +
{{#set: left-end-position=81810}}
 +
{{#set: centisome-position=32.544872   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=5}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=17}}

Revision as of 18:42, 14 January 2021

Gene SJ18193

  • transcription-direction:
    • positive
  • right-end-position:
    • 90846
  • left-end-position:
    • 81810
  • centisome-position:
    • 32.544872

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7003
    • 8 reactions found over 6 reactions in the full pathway
  • FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-6886
    • 8 reactions found over 5 reactions in the full pathway
  • PWY-7218
    • 7 reactions found over 4 reactions in the full pathway
  • PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-2221
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7383
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6901
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • NPGLUCAT-PWY
    • 4 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ20332&oldid=92800"