Difference between revisions of "SJ20427"
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(Created page with "Category:gene == Gene SJ19420 == * transcription-direction: ** positive * right-end-position: ** 201566 * left-end-position: ** 193929 * centisome-position: ** 85.32753...") |
(Created page with "Category:gene == Gene SJ20427 == * transcription-direction: ** negative * right-end-position: ** 499923 * left-end-position: ** 490119 * centisome-position: ** 43.15518...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ20427 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 499923 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 490119 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 43.15518 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[APIGNAR-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[CHALCONE-ISOMERASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | * [[RXN-3221]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | * [[RXN- | + | * [[RXN-7647]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY1F-FLAVSYN]] |
| − | ** '''6''' reactions found over ''' | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[PWY-6787]] |
| − | {{#set: right-end-position= | + | ** '''6''' reactions found over '''10''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PWY-7397]] |
| − | {{#set: centisome-position= | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
| + | * [[PWY-7897]] | ||
| + | ** '''3''' reactions found over '''15''' reactions in the full pathway | ||
| + | * [[PWY-2002]] | ||
| + | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY-6325]] | ||
| + | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY-5059]] | ||
| + | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=499923}} | ||
| + | {{#set: left-end-position=490119}} | ||
| + | {{#set: centisome-position=43.15518 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
Latest revision as of 11:02, 18 March 2021
Contents
Gene SJ20427
- transcription-direction:
- negative
- right-end-position:
- 499923
- left-end-position:
- 490119
- centisome-position:
- 43.15518
Organism(s) associated with this gene
Reaction(s) associated
- APIGNAR-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- CHALCONE-ISOMERASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-3221
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-7647
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY1F-FLAVSYN
- 5 reactions found over 5 reactions in the full pathway
- PWY-6787
- 6 reactions found over 10 reactions in the full pathway
- PWY-7397
- 3 reactions found over 4 reactions in the full pathway
- PWY-7897
- 3 reactions found over 15 reactions in the full pathway
- PWY-2002
- 1 reactions found over 5 reactions in the full pathway
- PWY-6325
- 1 reactions found over 5 reactions in the full pathway
- PWY-5059
- 3 reactions found over 5 reactions in the full pathway
