Difference between revisions of "SJ20460"
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(Created page with "Category:gene == Gene SJ06565 == * transcription-direction: ** negative * right-end-position: ** 432509 * left-end-position: ** 398048 * centisome-position: ** 84.15053...") |
(Created page with "Category:gene == Gene SJ02923 == * transcription-direction: ** positive * right-end-position: ** 510784 * left-end-position: ** 495267 * centisome-position: ** 93.25499...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ02923 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 510784 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 495267 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 93.25499 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[G5DH]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[G5DHm]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[GLUTKIN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | * [[ | + | * [[GLUTSEMIALDEHYDROG-RXN]] |
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-6922]] |
| − | ** '''5''' reactions found over ''' | + | ** '''5''' reactions found over '''7''' reactions in the full pathway |
| − | * [[PWY- | + | * [[ARGININE-SYN4-PWY]] |
| − | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[PWY-3341]] |
| − | {{#set: right-end-position= | + | ** '''4''' reactions found over '''3''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PROSYN-PWY]] |
| − | {{#set: centisome-position= | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
| + | * [[CITRULBIO-PWY]] | ||
| + | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=510784}} | ||
| + | {{#set: left-end-position=495267}} | ||
| + | {{#set: centisome-position=93.25499 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
Revision as of 11:09, 15 January 2021
Contents
Gene SJ02923
- transcription-direction:
- positive
- right-end-position:
- 510784
- left-end-position:
- 495267
- centisome-position:
- 93.25499
Organism(s) associated with this gene
Reaction(s) associated
- G5DH
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- G5DHm
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- GLUTKIN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- GLUTSEMIALDEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6922
- 5 reactions found over 7 reactions in the full pathway
- ARGININE-SYN4-PWY
- 3 reactions found over 4 reactions in the full pathway
- PWY-3341
- 4 reactions found over 3 reactions in the full pathway
- PROSYN-PWY
- 3 reactions found over 4 reactions in the full pathway
- CITRULBIO-PWY
- 7 reactions found over 8 reactions in the full pathway
