Difference between revisions of "SJ20499"

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(Created page with "Category:gene == Gene SJ06657 == * transcription-direction: ** negative * right-end-position: ** 51994 * left-end-position: ** 42460 * centisome-position: ** 8.993970...")
(Created page with "Category:gene == Gene SJ05075 == * transcription-direction: ** positive * right-end-position: ** 418804 * left-end-position: ** 410982 * centisome-position: ** 81.76126...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ06657 ==
+
== Gene SJ05075 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 51994
+
** 418804
 
* left-end-position:
 
* left-end-position:
−
** 42460
+
** 410982
 
* centisome-position:
 
* centisome-position:
−
** 8.993970    
+
** 81.76126    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_carotenoid_curated]]
+
* [[S.japonica_sterols_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[MALATE-DEH-RXN]]
−
* [[6.3.4.10-RXN]]
+
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[6.3.4.11-RXN]]
+
* [[MALATE-DEHYDROGENASE-NADP+-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[6.3.4.9-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[BIOTINLIG-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13039]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17127]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-8654]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-8655]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-1141]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-5098]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-7192]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY0-1264]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-6969]]
−
* [[PWY-6984]]
+
** '''10''' reactions found over '''12''' reactions in the full pathway
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
* [[P23-PWY]]
−
* [[PWY0-522]]
+
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]]
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-1622]]
 +
** '''6''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7383]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[P42-PWY]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5392]]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5690]]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7115]]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[TCA]]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-561]]
 +
** '''6''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5913]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6728]]
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
* [[P105-PWY]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-398]]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[P108-PWY]]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY0-1275]]
+
* [[PWY66-399]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[PWY-241]]
−
{{#set: right-end-position=51994}}
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
{{#set: left-end-position=42460}}
+
* [[PWY-7117]]
−
{{#set: centisome-position=8.993970   }}
+
** '''10''' reactions found over '''12''' reactions in the full pathway
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
+
</div>
−
{{#set: nb reaction associated=11}}
+
{{#set: transcription-direction=positive}}
−
{{#set: nb pathway associated=4}}
+
{{#set: right-end-position=418804}}
 +
{{#set: left-end-position=410982}}
 +
{{#set: centisome-position=81.76126   }}
 +
{{#set: organism associated=S.japonica_sterols_curated}}
 +
{{#set: nb reaction associated=2}}
 +
{{#set: nb pathway associated=22}}

Revision as of 20:25, 18 December 2020

Gene SJ05075

  • transcription-direction:
    • positive
  • right-end-position:
    • 418804
  • left-end-position:
    • 410982
  • centisome-position:
    • 81.76126

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • P23-PWY
    • 9 reactions found over 12 reactions in the full pathway
  • FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-1622
    • 6 reactions found over 13 reactions in the full pathway
  • PWY-7383
    • 4 reactions found over 7 reactions in the full pathway
  • P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7115
    • 9 reactions found over 10 reactions in the full pathway
  • TCA
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-561
    • 6 reactions found over 4 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6728
    • 11 reactions found over 19 reactions in the full pathway
  • P105-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-398
    • 10 reactions found over 10 reactions in the full pathway
  • P108-PWY
    • 2 reactions found over 7 reactions in the full pathway
  • MALATE-ASPARTATE-SHUTTLE-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-241
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 12 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ20499&oldid=43361"