Difference between revisions of "SJ20639"

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(Created page with "Category:gene == Gene SJ12670 == * transcription-direction: ** negative * right-end-position: ** 89698 * left-end-position: ** 50762 * centisome-position: ** 14.256387...")
(Created page with "Category:gene == Gene SJ20639 == * transcription-direction: ** positive * right-end-position: ** 389712 * left-end-position: ** 377072 * centisome-position: ** 61.156994...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ12670 ==
+
== Gene SJ20639 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 89698
+
** 389712
 
* left-end-position:
 
* left-end-position:
−
** 50762
+
** 377072
 
* centisome-position:
 
* centisome-position:
−
** 14.256387    
+
** 61.156994    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
+
* [[ARGSUCCINLYA-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[BIOTIN-CARBOXYL-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[DALADALALIG-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[PCr]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[PYRUVATE-CARBOXYLASE-RXN]]
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-22]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 30: Line 25:
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ARGSYN-PWY]]
−
* [[PWY-7388]]
+
** '''5''' reactions found over '''4''' reactions in the full pathway
−
** '''7''' reactions found over '''11''' reactions in the full pathway
+
* [[PWY-4983]]
−
* [[PWY-6679]]
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7400]]
−
* [[PWY-5744]]
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
** '''4''' reactions found over '''13''' reactions in the full pathway
+
* [[PWY-4984]]
−
* [[PWY-5743]]
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** '''5''' reactions found over '''13''' reactions in the full pathway
+
* [[ARGSYNBSUB-PWY]]
−
* [[PWY-5789]]
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
** '''8''' reactions found over '''18''' reactions in the full pathway
+
* [[PWY-5154]]
−
* [[PWY0-1264]]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5]]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7953]]
+
{{#set: transcription-direction=positive}}
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
{{#set: right-end-position=389712}}
−
* [[PWY-6386]]
+
{{#set: left-end-position=377072}}
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
{{#set: centisome-position=61.156994   }}
−
* [[PWY-6387]]
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
{{#set: nb reaction associated=2}}
−
* [[PWY-5750]]
+
{{#set: nb pathway associated=7}}
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[P42-PWY]]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY66-399]]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-6146]]
 
−
** '''9''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6142]]
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=89698}}
 
−
{{#set: left-end-position=50762}}
 
−
{{#set: centisome-position=14.256387   }}
 
−
{{#set: organism associated=S.japonica_sterols_curated}}
 
−
{{#set: nb reaction associated=5}}
 
−
{{#set: nb pathway associated=14}}
 

Latest revision as of 11:09, 18 March 2021

Gene SJ20639

  • transcription-direction:
    • positive
  • right-end-position:
    • 389712
  • left-end-position:
    • 377072
  • centisome-position:
    • 61.156994

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • ARGSYN-PWY
    • 5 reactions found over 4 reactions in the full pathway
  • PWY-4983
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5154
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5
    • 3 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ20639&oldid=135926"