Difference between revisions of "SJ20639"

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(Created page with "Category:gene == Gene SJ17249 == * transcription-direction: ** negative * right-end-position: ** 48135 * left-end-position: ** 36987 * centisome-position: ** 5.460738...")
(Created page with "Category:gene == Gene SJ12670 == * transcription-direction: ** negative * right-end-position: ** 89698 * left-end-position: ** 50762 * centisome-position: ** 14.256387...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ17249 ==
+
== Gene SJ12670 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 48135
+
** 89698
 
* left-end-position:
 
* left-end-position:
−
** 36987
+
** 50762
 
* centisome-position:
 
* centisome-position:
−
** 5.460738    
+
** 14.256387    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_carotenoid_curated]]
+
* [[S.japonica_sterols_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
−
* [[1.2.1.18-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[1.2.1.27-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[ALDHDEHYDROG-RXN]]
+
* [[BIOTIN-CARBOXYL-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[R222-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10089]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10715]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10780]]
+
* [[DALADALALIG-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10912]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10917]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-11213]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[PCr]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14224]]
+
* [[PYRUVATE-CARBOXYLASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14225]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14280]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16653]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16654]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16655]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16656]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17808]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-2902]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-3443]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-37]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-4142]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9758]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9958]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-3]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-472]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-476]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-479]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN6666-5]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-5642]]
+
* [[PWY-7388]]
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
** '''7''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7269]]
+
* [[PWY-6679]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[P221-PWY]]
+
* [[PWY-5744]]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6181]]
+
* [[PWY-5743]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6307]]
+
* [[PWY-5789]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''8''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-6313]]
+
* [[PWY0-1264]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6342]]
+
* [[PWY-7953]]
−
** '''8''' reactions found over '''13''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
* [[VALDEG-PWY]]
+
* [[PWY-6386]]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
* [[BETA-ALA-DEGRADATION-I-PWY]]
+
* [[PWY-6387]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7574]]
+
* [[PWY-5750]]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''2''' reactions in the full pathway
−
* [[P562-PWY]]
+
* [[P42-PWY]]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-1781]]
+
* [[PWY66-399]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-2221]]
+
* [[PWY-6146]]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''9''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-0]]
+
* [[PWY-6142]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''10''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-2724]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-2501]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6054]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6055]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6373]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7387]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-21]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-162]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-161]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-387]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY66-388]]
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY66-389]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY6666-2]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7431]]
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
 
</div>
 
</div>
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=48135}}
+
{{#set: right-end-position=89698}}
−
{{#set: left-end-position=36987}}
+
{{#set: left-end-position=50762}}
−
{{#set: centisome-position=5.460738   }}
+
{{#set: centisome-position=14.256387   }}
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
+
{{#set: organism associated=S.japonica_sterols_curated}}
−
{{#set: nb reaction associated=29}}
+
{{#set: nb reaction associated=5}}
−
{{#set: nb pathway associated=28}}
+
{{#set: nb pathway associated=14}}

Revision as of 20:28, 18 December 2020

Gene SJ12670

  • transcription-direction:
    • negative
  • right-end-position:
    • 89698
  • left-end-position:
    • 50762
  • centisome-position:
    • 14.256387

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7388
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-6679
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-5744
    • 4 reactions found over 13 reactions in the full pathway
  • PWY-5743
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-5789
    • 8 reactions found over 18 reactions in the full pathway
  • PWY0-1264
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7953
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6386
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6387
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-5750
    • 3 reactions found over 2 reactions in the full pathway
  • P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-6146
    • 9 reactions found over 2 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ20639&oldid=44742"