Difference between revisions of "SJ20680"
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(Created page with "Category:gene == Gene SJ20680 == * transcription-direction: ** negative * right-end-position: ** 94819 * left-end-position: ** 93143 * centisome-position: ** 45.48176...") |
(Created page with "Category:gene == Gene SJ04905 == * transcription-direction: ** positive * right-end-position: ** 56193 * left-end-position: ** 52834 * centisome-position: ** 53.687634...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ04905 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 56193 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 52834 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 53.687634 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[RIBULP3EPIM-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | ** Category: [[orthology]] |
| − | {{#set: right-end-position= | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: left-end-position= | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: centisome-position= | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | == Pathway(s) associated == | ||
| + | * [[PWY-1861]] | ||
| + | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[P21-PWY]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[NONOXIPENT-PWY]] | ||
| + | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY-5723]] | ||
| + | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
| + | * [[P124-PWY]] | ||
| + | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
| + | * [[CALVIN-PWY]] | ||
| + | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
| + | * [[P122-PWY]] | ||
| + | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
| + | * [[P185-PWY]] | ||
| + | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=56193}} | ||
| + | {{#set: left-end-position=52834}} | ||
| + | {{#set: centisome-position=53.687634 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
{{#set: nb reaction associated=1}} | {{#set: nb reaction associated=1}} | ||
| + | {{#set: nb pathway associated=8}} | ||
Revision as of 11:05, 15 January 2021
Contents
Gene SJ04905
- transcription-direction:
- positive
- right-end-position:
- 56193
- left-end-position:
- 52834
- centisome-position:
- 53.687634
Organism(s) associated with this gene
Reaction(s) associated
- RIBULP3EPIM-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-1861
- 7 reactions found over 9 reactions in the full pathway
- P21-PWY
- 3 reactions found over 3 reactions in the full pathway
- NONOXIPENT-PWY
- 5 reactions found over 5 reactions in the full pathway
- PWY-5723
- 10 reactions found over 10 reactions in the full pathway
- P124-PWY
- 12 reactions found over 15 reactions in the full pathway
- CALVIN-PWY
- 12 reactions found over 13 reactions in the full pathway
- P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- P185-PWY
- 11 reactions found over 12 reactions in the full pathway
