Difference between revisions of "SJ20887"

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(Created page with "Category:gene == Gene SJ07027 == * transcription-direction: ** positive * right-end-position: ** 278993 * left-end-position: ** 247082 * centisome-position: ** 53.03122...")
 
(Created page with "Category:gene == Gene SJ20887 == * transcription-direction: ** negative * right-end-position: ** 336921 * left-end-position: ** 331160 * centisome-position: ** 54.24424...")
 
(9 intermediate revisions by 5 users not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ07027 ==
+
== Gene SJ20887 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 278993
+
** 336921
 
* left-end-position:
 
* left-end-position:
−
** 247082
+
** 331160
 
* centisome-position:
 
* centisome-position:
−
** 53.03122    
+
** 54.24424    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
Line 16: Line 16:
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[6PGLUCONOLACT-RXN]]
+
* [[3.1.1.73-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 31: Line 31:
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12086]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-12252]]
 
* [[RXN-12252]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
Line 37: Line 40:
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12579]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXNQT-4366]]
 
* [[RXNQT-4366]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[TRIACYLGLYCEROL-LIPASE-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[GLYCOLYSIS-E-D]]
+
* [[PWY-6784]]
−
** '''4''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[OXIDATIVEPENT-PWY]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[RUMP-PWY]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[P122-PWY]]
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
 
* [[PWY-6303]]
 
* [[PWY-6303]]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
* [[PWY-6857]]
 
* [[PWY-6857]]
 
** '''3''' reactions found over '''7''' reactions in the full pathway
 
** '''3''' reactions found over '''7''' reactions in the full pathway
−
{{#set: transcription-direction=positive}}
+
* [[LIPAS-PWY]]
−
{{#set: right-end-position=278993}}
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
{{#set: left-end-position=247082}}
+
{{#set: transcription-direction=negative}}
−
{{#set: centisome-position=53.03122   }}
+
{{#set: right-end-position=336921}}
 +
{{#set: left-end-position=331160}}
 +
{{#set: centisome-position=54.24424   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=9}}
+
{{#set: nb reaction associated=12}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=4}}

Latest revision as of 11:10, 18 March 2021

Gene SJ20887

  • transcription-direction:
    • negative
  • right-end-position:
    • 336921
  • left-end-position:
    • 331160
  • centisome-position:
    • 54.24424

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6784
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6303
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6857
    • 3 reactions found over 7 reactions in the full pathway
  • LIPAS-PWY
    • 2 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ20887&oldid=136302"