Difference between revisions of "SJ21131"

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(Created page with "Category:gene == Gene SJ18402 == * transcription-direction: ** positive * right-end-position: ** 89915 * left-end-position: ** 62103 * centisome-position: ** 25.144646...")
 
(Created page with "Category:gene == Gene SJ18127 == * transcription-direction: ** positive * right-end-position: ** 37660 * left-end-position: ** 29240 * centisome-position: ** 11.604141...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ18402 ==
+
== Gene SJ18127 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 89915
+
** 37660
 
* left-end-position:
 
* left-end-position:
−
** 62103
+
** 29240
 
* centisome-position:
 
* centisome-position:
−
** 25.144646    
+
** 11.604141    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
+
* [[GPPSYN-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-11056]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-11057]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13064]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-15029]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17334]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[5-NUCLEOTID-RXN]]
+
* [[RXN-17335]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17625]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-17627]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[AMP-DEPHOSPHORYLATION-RXN]]
+
* [[RXN-8630]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[NUCLEOTIDASE-RXN]]
+
* [[RXN-8872]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14025]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14026]]
+
* [[RXN66-146]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14227]]
+
* [[RXN66-161]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14473]]
+
* [[RXN66-163]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17947]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17948]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-5841]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-7607]]
+
* [[RXN66-169]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-7609]]
+
* [[RXN66-181]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[XMPXAN-RXN]]
+
* [[UNSPECIFIC-MONOOXYGENASE-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
Line 76: Line 67:
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[SALVADEHYPOX-PWY]]
+
* [[PWY-6383]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7821]]
+
* [[PWY-7410]]
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7185]]
+
* [[PWY-7102]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6859]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7736]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5122]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7141]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7659]]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7709]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5123]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7182]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6398]]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5381]]
+
* [[PWY-6992]]
−
** '''6''' reactions found over '''11''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[NAD-BIOSYNTHESIS-II]]
+
* [[PWY-7407]]
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-6596]]
+
* [[PWY-5451]]
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6606]]
+
* [[PWY-7466]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6607]]
+
* [[PWY-5665]]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6608]]
+
* [[PWY-7826]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''25''' reactions in the full pathway
−
* [[PWY-5695]]
+
* [[PWY66-201]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY66-221]]
 +
** '''5''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY66-241]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 
</div>
 
</div>
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=89915}}
+
{{#set: right-end-position=37660}}
−
{{#set: left-end-position=62103}}
+
{{#set: left-end-position=29240}}
−
{{#set: centisome-position=25.144646   }}
+
{{#set: centisome-position=11.604141   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=14}}
+
{{#set: nb reaction associated=17}}
−
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=21}}

Revision as of 14:21, 26 August 2019

Gene SJ18127

  • transcription-direction:
    • positive
  • right-end-position:
    • 37660
  • left-end-position:
    • 29240
  • centisome-position:
    • 11.604141

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7410
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7182
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6398
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6992
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7407
    • 2 reactions found over 11 reactions in the full pathway
  • PWY-5451
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7466
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5665
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7826
    • 2 reactions found over 25 reactions in the full pathway
  • PWY66-201
    • 3 reactions found over 16 reactions in the full pathway
  • PWY66-221
    • 5 reactions found over 18 reactions in the full pathway
  • PWY66-241
    • 1 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ21131&oldid=17341"