Difference between revisions of "SJ21660"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SUC-COA SUC-COA] == * common-name: ** succinyl-coa * smiles: ** cc(c)(c(o)c(=o)nccc(=o)nccsc(=o...")
(Created page with "Category:gene == Gene SJ21660 == * transcription-direction: ** positive * right-end-position: ** 227030 * left-end-position: ** 213067 * centisome-position: ** 18.835367...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SUC-COA SUC-COA] ==
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== Gene SJ21660 ==
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* common-name:
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* transcription-direction:
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** succinyl-coa
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** positive
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* smiles:
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* right-end-position:
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** cc(c)(c(o)c(=o)nccc(=o)nccsc(=o)ccc(=o)[o-])cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
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** 227030
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* inchi-key:
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* left-end-position:
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** vnoyujkhfwywir-itiydsspsa-i
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** 213067
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* molecular-weight:
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* centisome-position:
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** 862.568
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** 18.835367   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[AKGDHe2r]]
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* [[S.japonica_carotenoid_curated]]
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* [[HOMSUCTRAN-RXN]]
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== Reaction(s) associated ==
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* [[RXN0-1147]]
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* [[AICARTRANSFORM-RXN]]
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* [[SUCCCOASYN-RXN]]
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** Category: [[annotation]]
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* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[SUCL_LPAREN_gdp_RPAREN_m]]
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** Category: [[orthology]]
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== Reaction(s) known to produce the compound ==
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[2OXOGLUTARATEDEH-RXN]]
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* [[FPAIF]]
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* [[AKGDHe2r]]
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** Category: [[orthology]]
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* [[RXN0-1147]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[SUCCCOASYN-RXN]]
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* [[IMPCYCLOHYDROLASE-RXN]]
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* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
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** Category: [[annotation]]
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* [[SUCL_LPAREN_gdp_RPAREN_m]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reaction(s) of unknown directionality ==
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** Category: [[orthology]]
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{{#set: common-name=succinyl-coa}}
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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{{#set: inchi-key=inchikey=vnoyujkhfwywir-itiydsspsa-i}}
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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{{#set: molecular-weight=862.568}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== Pathway(s) associated ==
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* [[PWY-6123]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6124]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7234]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=227030}}
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{{#set: left-end-position=213067}}
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{{#set: centisome-position=18.835367    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=3}}
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{{#set: nb pathway associated=3}}

Latest revision as of 11:04, 18 March 2021

Gene SJ21660

  • transcription-direction:
    • positive
  • right-end-position:
    • 227030
  • left-end-position:
    • 213067
  • centisome-position:
    • 18.835367

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6123
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6124
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7234
    • 3 reactions found over 6 reactions in the full pathway




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