Difference between revisions of "SJ21818"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-B CHLOROPHYLL-B] == * smiles: ** c=cc2(c(c)=c4(c=c9(c(c)c(ccc(=o)occ=c(c)cccc(c)ccc...")
 
(Created page with "Category:gene == Gene SJ21818 == * transcription-direction: ** positive * right-end-position: ** 61735 * left-end-position: ** 58750 * centisome-position: ** 31.623936...")
 
(9 intermediate revisions by 5 users not shown)
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-B CHLOROPHYLL-B] ==
+
== Gene SJ21818 ==
−
* smiles:
+
* transcription-direction:
−
** c=cc2(c(c)=c4(c=c9(c(c)c(ccc(=o)occ=c(c)cccc(c)cccc(c)cccc(c)c)c5(=n([mg]36(n1(=c(c(cc)=c(c=o)c1=cc=2n34)c=c7(c(c)=c8(c(=o)c(c(oc)=o)c5=c(n67)8)))))9))))
+
** positive
−
* common-name:
+
* right-end-position:
−
** chlorophyll b
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** 61735
−
* molecular-weight:
+
* left-end-position:
−
** 907.486
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** 58750
−
== Reaction(s) known to consume the compound ==
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* centisome-position:
−
== Reaction(s) known to produce the compound ==
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** 31.623936   
−
* [[RXN-7674]]
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== Organism(s) associated with this gene  ==
−
== Reaction(s) of unknown directionality ==
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* [[S.japonica_carotenoid_curated]]
−
{{#set: common-name=chlorophyll b}}
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== Reaction(s) associated ==
−
{{#set: molecular-weight=907.486}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[2.3.1.176-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[ACACT1h]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ACACT2h]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ACACT4]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ACACT4h]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ACACT6]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ACACT6h]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ACACT7]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ACACT7h]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ACACT7m]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ACCAT]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[KETOACYLCOATHIOL-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[METHYLACETOACETYLCOATHIOL-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10699]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10700]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10701]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11246]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11917]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-11921]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12565]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12710]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13617]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14268]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14274]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14277]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14394]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14774]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14788]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14793]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14799]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14803]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16137]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17116]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17778]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17782]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17787]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17791]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17795]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17799]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-2006]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-6061]]
 +
** '''3''' reactions found over '''29''' reactions in the full pathway
 +
* [[PWY-6583]]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5789]]
 +
** '''8''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY1-3]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7216]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7401]]
 +
** '''6''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-7391]]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[P162-PWY]]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5741]]
 +
** '''2''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6863]]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[P163-PWY]]
 +
** '''3''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7779]]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7778]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7524]]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY66-368]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-367]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5676]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[CENTFERM-PWY]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6174]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6883]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6876]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[ACETOACETATE-DEG-PWY]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5177]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6588]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-922]]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7288]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5136]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[FAO-PWY]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-391]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[ILEUDEG-PWY]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5109]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-735]]
 +
** '''16''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-6435]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6672]]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6945]]
 +
** '''5''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6946]]
 +
** '''6''' reactions found over '''22''' reactions in the full pathway
 +
* [[PWY-6948]]
 +
** '''2''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7094]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7654]]
 +
** '''5''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7337]]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7338]]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7339]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7340]]
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7606]]
 +
** '''8''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7726]]
 +
** '''8''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-6458]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[P281-PWY]]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6443]]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-481]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=61735}}
 +
{{#set: left-end-position=58750}}
 +
{{#set: centisome-position=31.623936    }}
 +
{{#set: organism associated=S.japonica_carotenoid_curated}}
 +
{{#set: nb reaction associated=41}}
 +
{{#set: nb pathway associated=49}}

Latest revision as of 11:01, 18 March 2021

Gene SJ21818

  • transcription-direction:
    • positive
  • right-end-position:
    • 61735
  • left-end-position:
    • 58750
  • centisome-position:
    • 31.623936

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6061
    • 3 reactions found over 29 reactions in the full pathway
  • PWY-6583
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5789
    • 8 reactions found over 18 reactions in the full pathway
  • PWY1-3
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7216
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7401
    • 6 reactions found over 15 reactions in the full pathway
  • PWY-7391
    • 7 reactions found over 8 reactions in the full pathway
  • P162-PWY
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-5741
    • 2 reactions found over 11 reactions in the full pathway
  • PWY-6863
    • 9 reactions found over 11 reactions in the full pathway
  • P163-PWY
    • 3 reactions found over 10 reactions in the full pathway
  • PWY-7779
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-7778
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7524
    • 5 reactions found over 8 reactions in the full pathway
  • PWY66-368
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-367
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5676
    • 4 reactions found over 5 reactions in the full pathway
  • CENTFERM-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6174
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6883
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6876
    • 2 reactions found over 5 reactions in the full pathway
  • ACETOACETATE-DEG-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5177
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6588
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-922
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7288
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5136
    • 5 reactions found over 5 reactions in the full pathway
  • FAO-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • PWY66-391
    • 6 reactions found over 7 reactions in the full pathway
  • ILEUDEG-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5109
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-735
    • 16 reactions found over 19 reactions in the full pathway
  • PWY-6435
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6672
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-6945
    • 5 reactions found over 17 reactions in the full pathway
  • PWY-6946
    • 6 reactions found over 22 reactions in the full pathway
  • PWY-6948
    • 2 reactions found over 18 reactions in the full pathway
  • PWY-7094
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7654
    • 5 reactions found over 11 reactions in the full pathway
  • PWY-7337
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-7338
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-7339
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7340
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-7606
    • 8 reactions found over 14 reactions in the full pathway
  • PWY-7726
    • 8 reactions found over 13 reactions in the full pathway
  • PWY-6458
    • 1 reactions found over 3 reactions in the full pathway
  • P281-PWY
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6443
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-481
    • 2 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ21818&oldid=132067"