|
|
| Line 1: |
Line 1: |
| | [[Category:gene]] | | [[Category:gene]] |
| − | == Gene SJ20026 == | + | == Gene SJ21008 == |
| | * transcription-direction: | | * transcription-direction: |
| − | ** negative | + | ** positive |
| | * right-end-position: | | * right-end-position: |
| − | ** 262511 | + | ** 60459 |
| | * left-end-position: | | * left-end-position: |
| − | ** 248639 | + | ** 52735 |
| | * centisome-position: | | * centisome-position: |
| − | ** 39.972057 | + | ** 26.204119 |
| | == Organism(s) associated with this gene == | | == Organism(s) associated with this gene == |
| | * [[S.japonica_carotenoid_curated]] | | * [[S.japonica_carotenoid_curated]] |
| | == Reaction(s) associated == | | == Reaction(s) associated == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * [[LYSINE--TRNA-LIGASE-RXN]] |
| − | * [[ACETYLHOMOSER-CYS-RXN]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[ACHMSSELCYSL]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[ACHMSSELCYSLh]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[CYSTATHIONINE-BETA-SYNTHASE-RXN]] | |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[CYSTHIOCYS-RXN]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[HOMOCYSTEINE-DESULFHYDRASE-RXN]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * [[HOMOSERDEAM-RXN]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[LCYSDESULF-RXN]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[METBALT-RXN]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[O-SUCCHOMOSERLYASE-RXN]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[RXN-12728]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[RXN-14048]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[RXN-14049]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[RXN-15128]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[RXN-15129]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[RXN-15130]]
| |
| | ** Category: [[annotation]] | | ** Category: [[annotation]] |
| | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
| | ** Category: [[orthology]] | | ** Category: [[orthology]] |
| | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | * [[RXN-15148]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * [[RXN-9384]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[SUCHMSSELCYSL]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[SUCHMSSELCYSLh]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[SULFOCYS-RXN]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) associated == | | == Pathway(s) associated == |
| − | * [[PWY-5344]] | + | * [[TRNA-CHARGING-PWY]] |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
| + | ** '''21''' reactions found over '''21''' reactions in the full pathway |
| − | * [[HOMOCYSDEGR-PWY]]
| + | {{#set: transcription-direction=positive}} |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
| + | {{#set: right-end-position=60459}} |
| − | * [[PWY-I9]]
| + | {{#set: left-end-position=52735}} |
| − | ** '''4''' reactions found over '''5''' reactions in the full pathway
| + | {{#set: centisome-position=26.204119 }} |
| − | * [[PWY-801]]
| |
| − | ** '''3''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY66-426]]
| |
| − | ** '''2''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[HOMOSER-METSYN-PWY]]
| |
| − | ** '''4''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY-6936]]
| |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[LCYSDEG-PWY]]
| |
| − | ** '''1''' reactions found over '''3''' reactions in the full pathway
| |
| − | * [[PWY-7870]]
| |
| − | ** '''2''' reactions found over '''4''' reactions in the full pathway | |
| − | {{#set: transcription-direction=negative}} | |
| − | {{#set: right-end-position=262511}} | |
| − | {{#set: left-end-position=248639}} | |
| − | {{#set: centisome-position=39.972057 }} | |
| | {{#set: organism associated=S.japonica_carotenoid_curated}} | | {{#set: organism associated=S.japonica_carotenoid_curated}} |
| − | {{#set: nb reaction associated=21}} | + | {{#set: nb reaction associated=1}} |
| − | {{#set: nb pathway associated=9}} | + | {{#set: nb pathway associated=1}} |
