Difference between revisions of "SJ22039"

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(Created page with "Category:gene == Gene SJ10794 == * transcription-direction: ** positive * right-end-position: ** 314960 * left-end-position: ** 295807 * centisome-position: ** 77.13089...")
(Created page with "Category:gene == Gene SJ22039 == * transcription-direction: ** negative * right-end-position: ** 61145 * left-end-position: ** 32824 * centisome-position: ** 18.061861...")
 
(2 intermediate revisions by one other user not shown)
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[[Category:gene]]
 
[[Category:gene]]
== Gene SJ10794 ==
+
== Gene SJ22039 ==
 
* transcription-direction:
 
* transcription-direction:
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
** 314960
+
** 61145
 
* left-end-position:
 
* left-end-position:
** 295807
+
** 32824
 
* centisome-position:
 
* centisome-position:
** 77.13089    
+
** 18.061861    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
* [[HOMOCYSMET-RXN]]
+
* [[2-HYDROXYGLUTARATE-DEHYDROGENASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
** Category: [[orthology]]
+
* [[RXN-969]]
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* [[S-2-HYDROXY-ACID-OXIDASE-RXN]]
* [[RXN-12730]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
* [[PWY-5041]]
+
* [[PWY-181]]
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
* [[HSERMETANA-PWY]]
+
{{#set: transcription-direction=negative}}
** '''3''' reactions found over '''2''' reactions in the full pathway
+
{{#set: right-end-position=61145}}
* [[HOMOSER-METSYN-PWY]]
+
{{#set: left-end-position=32824}}
** '''4''' reactions found over '''7''' reactions in the full pathway
+
{{#set: centisome-position=18.061861   }}
* [[PWY-6151]]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-702]]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-6936]]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
{{#set: transcription-direction=positive}}
 
{{#set: right-end-position=314960}}
 
{{#set: left-end-position=295807}}
 
{{#set: centisome-position=77.13089   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
{{#set: nb reaction associated=2}}
+
{{#set: nb reaction associated=3}}
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}

Latest revision as of 11:07, 18 March 2021

Gene SJ22039

  • transcription-direction:
    • negative
  • right-end-position:
    • 61145
  • left-end-position:
    • 32824
  • centisome-position:
    • 18.061861

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-181
    • 5 reactions found over 9 reactions in the full pathway