Difference between revisions of "SJ22166"
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(Created page with "Category:gene == Gene SJ04766 == * transcription-direction: ** positive * right-end-position: ** 29555 * left-end-position: ** 26121 * centisome-position: ** 25.890574...") |
(Created page with "Category:gene == Gene SJ22166 == * transcription-direction: ** negative * right-end-position: ** 468963 * left-end-position: ** 455190 * centisome-position: ** 78.015495...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ22166 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 468963 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 455190 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 78.015495 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[ENOYL-COA-DELTA-ISOM-RXN]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | * [[ | + | * [[HICH]] |
| − | + | ** Category: [[orthology]] | |
| − | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | |
| − | + | * [[RXN-13721]] | |
| − | ** Category: [[ | ||
| − | *** source: [[ | ||
| − | * [[RXN- | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | * [[RXN-6384]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY | + | * [[VALDEG-PWY]] |
| − | ** ''' | + | ** '''6''' reactions found over '''8''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-5137]] |
| + | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
| + | * [[FAO-PWY]] | ||
** '''6''' reactions found over '''7''' reactions in the full pathway | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
| − | * [[PWY- | + | * [[PWY-3941]] |
| − | ** ''' | + | ** '''2''' reactions found over '''6''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-7574]] |
| − | ** ''' | + | ** '''3''' reactions found over '''5''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | {{#set: transcription-direction=negative}} |
| − | {{#set: right-end-position= | + | {{#set: right-end-position=468963}} |
| − | {{#set: left-end-position= | + | {{#set: left-end-position=455190}} |
| − | {{#set: centisome-position= | + | {{#set: centisome-position=78.015495 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
{{#set: nb reaction associated=5}} | {{#set: nb reaction associated=5}} | ||
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
Latest revision as of 11:10, 18 March 2021
Contents
Gene SJ22166
- transcription-direction:
- negative
- right-end-position:
- 468963
- left-end-position:
- 455190
- centisome-position:
- 78.015495
Organism(s) associated with this gene
Reaction(s) associated
- 3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: annotation
- ENOYL-COA-DELTA-ISOM-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- HICH
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-13721
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-6384
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- VALDEG-PWY
- 6 reactions found over 8 reactions in the full pathway
- PWY-5137
- 1 reactions found over 1 reactions in the full pathway
- FAO-PWY
- 6 reactions found over 7 reactions in the full pathway
- PWY-3941
- 2 reactions found over 6 reactions in the full pathway
- PWY-7574
- 3 reactions found over 5 reactions in the full pathway
