Difference between revisions of "SJ22166"

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(Created page with "Category:gene == Gene SJ18183 == * transcription-direction: ** negative * right-end-position: ** 119252 * left-end-position: ** 115282 * centisome-position: ** 45.860386...")
(Created page with "Category:gene == Gene SJ04766 == * transcription-direction: ** positive * right-end-position: ** 29555 * left-end-position: ** 26121 * centisome-position: ** 25.890574...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ18183 ==
+
== Gene SJ04766 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 119252
+
** 29555
 
* left-end-position:
 
* left-end-position:
−
** 115282
+
** 26121
 
* centisome-position:
 
* centisome-position:
−
** 45.860386    
+
** 25.890574    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ATPASE-RXN]]
−
* [[OHMETPYRKIN-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PYRIMSYN3-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-12195]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-12610]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12611]]
+
* [[RXN-12196]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[THI-P-SYN-RXN]]
+
* [[RXN0-5462]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7210]]
−
* [[PWY-6910]]
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
* [[PWY-7198]]
−
* [[PWY-7357]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7356]]
 
 
** '''6''' reactions found over '''7''' reactions in the full pathway
 
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6890]]
+
* [[PWY-7184]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7282]]
+
* [[PWY-6545]]
−
** '''6''' reactions found over '''10''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6907]]
+
{{#set: transcription-direction=positive}}
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
{{#set: right-end-position=29555}}
−
* [[PWY-6893]]
+
{{#set: left-end-position=26121}}
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
{{#set: centisome-position=25.890574   }}
−
* [[PWY-6894]]
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6908]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6897]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=119252}}
 
−
{{#set: left-end-position=115282}}
 
−
{{#set: centisome-position=45.860386   }}
 
−
{{#set: organism associated=S.japonica_sterols_curated}}
 
 
{{#set: nb reaction associated=5}}
 
{{#set: nb reaction associated=5}}
−
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=4}}

Revision as of 14:53, 5 January 2021

Gene SJ04766

  • transcription-direction:
    • positive
  • right-end-position:
    • 29555
  • left-end-position:
    • 26121
  • centisome-position:
    • 25.890574

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ22166&oldid=58304"