Difference between revisions of "SJ22252"

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(Created page with "Category:gene == Gene SJ12510 == * transcription-direction: ** negative * right-end-position: ** 164288 * left-end-position: ** 135322 * centisome-position: ** 37.82702...")
(Created page with "Category:gene == Gene SJ22252 == * transcription-direction: ** negative * right-end-position: ** 109426 * left-end-position: ** 100261 * centisome-position: ** 56.12461...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ12510 ==
+
== Gene SJ22252 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 164288
+
** 109426
 
* left-end-position:
 
* left-end-position:
−
** 135322
+
** 100261
 
* centisome-position:
 
* centisome-position:
−
** 37.82702    
+
** 56.12461    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ADENYL-KIN-RXN]]
+
* [[3.6.3.1-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[3.6.3.44-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ATPASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[PGCM]]
+
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PGMTh]]
+
* [[RXN-12195]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PHOSPHOGLUCMUT-RXN]]
+
* [[RXN-12196]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14456]]
+
* [[RXN0-5462]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16997]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-16998]]
+
* [[TRANS-RXN-311]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6545]]
−
* [[PWY-7219]]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-7210]]
−
* [[PWY-6737]]
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-7198]]
−
* [[PWY-7238]]
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
* [[PWY-7184]]
−
* [[GLYCOGENSYNTH-PWY]]
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[GLUCOSE1PMETAB-PWY]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7900]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6731]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5941]]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[GLYCOCAT-PWY]]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-622]]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6317]]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-2723]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-3801]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7343]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5940]]
 
−
** '''2''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-7902]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5384]]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5661]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-422]]
 
−
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 
−
</div>
 
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=164288}}
+
{{#set: right-end-position=109426}}
−
{{#set: left-end-position=135322}}
+
{{#set: left-end-position=100261}}
−
{{#set: centisome-position=37.82702   }}
+
{{#set: centisome-position=56.12461   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=8}}
−
{{#set: nb pathway associated=19}}
+
{{#set: nb pathway associated=4}}

Latest revision as of 11:09, 18 March 2021

Gene SJ22252

  • transcription-direction:
    • negative
  • right-end-position:
    • 109426
  • left-end-position:
    • 100261
  • centisome-position:
    • 56.12461

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ22252&oldid=135807"