Difference between revisions of "SJ22252"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ05836 == * transcription-direction: ** negative * right-end-position: ** 83884 * left-end-position: ** 63205 * centisome-position: ** 13.002308...")
(Created page with "Category:gene == Gene SJ10812 == * transcription-direction: ** positive * right-end-position: ** 144763 * left-end-position: ** 116858 * centisome-position: ** 30.486155...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ05836 ==
+
== Gene SJ10812 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 83884
+
** 144763
 
* left-end-position:
 
* left-end-position:
−
** 63205
+
** 116858
 
* centisome-position:
 
* centisome-position:
−
** 13.002308    
+
** 30.486155    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[3.1.3.57-RXN]]
+
* [[GLUTAMATE-SYNTHASE-FERREDOXIN-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[325-BISPHOSPHATE-NUCLEOTIDASE-RXN]]
+
* [[GLUTAMATE-SYNTHASE-NADH-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[NUCLEOTIDASE-RXN]]
+
* [[GLUTAMATESYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[R163-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-10939]]
+
* [[GLUTAMIN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14473]]
+
* [[GLUTDEHYD-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17947]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17948]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-7253]]
+
* [[RXN-12878]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN0-5408]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6363]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-6549]]
−
* [[PWY-2301]]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-4341]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6964]]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-4702]]
+
* [[PWY-6963]]
−
** '''3''' reactions found over '''14''' reactions in the full pathway
+
** '''4''' reactions found over '''2''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[GLUGLNSYN-PWY]]
−
{{#set: right-end-position=83884}}
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
{{#set: left-end-position=63205}}
+
* [[GLUTSYN-PWY]]
−
{{#set: centisome-position=13.002308   }}
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[GLUTAMINEFUM-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[CITRULBIO-PWY]]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[GLUTAMINDEG-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[GLUTSYNIII-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-5675]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY490-3]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5913]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=144763}}
 +
{{#set: left-end-position=116858}}
 +
{{#set: centisome-position=30.486155   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=12}}
+
{{#set: nb reaction associated=6}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=13}}

Revision as of 09:26, 27 August 2019

Gene SJ10812

  • transcription-direction:
    • positive
  • right-end-position:
    • 144763
  • left-end-position:
    • 116858
  • centisome-position:
    • 30.486155

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-4341
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6964
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6963
    • 4 reactions found over 2 reactions in the full pathway
  • GLUGLNSYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTSYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTAMINEFUM-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway
  • GLUTAMINDEG-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTSYNIII-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5675
    • 4 reactions found over 4 reactions in the full pathway
  • PWY490-3
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 11 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ22252&oldid=31631"