Difference between revisions of "SJ22289"
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(Created page with "Category:gene == Gene SJ08182 == * transcription-direction: ** positive * right-end-position: ** 103486 * left-end-position: ** 89108 * centisome-position: ** 20.03602...") |
(Created page with "Category:gene == Gene SJ22289 == * transcription-direction: ** negative * right-end-position: ** 86943 * left-end-position: ** 82068 * centisome-position: ** 45.984455...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ22289 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 86943 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 82068 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 45.984455 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | |||
− | |||
− | |||
* [[GSHTRAN-RXN]] | * [[GSHTRAN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* [[GST-RXN]] | * [[GST-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | ** Category: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | *** source: [[ | ||
* [[PROSTAGLANDIN-D-SYNTHASE-RXN]] | * [[PROSTAGLANDIN-D-SYNTHASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
Line 31: | Line 29: | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | |
− | |||
− | |||
− | ** Category: [[ | ||
− | *** source: [[ | ||
* [[RXN-15680]] | * [[RXN-15680]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | |
− | |||
− | |||
− | ** Category: [[ | ||
− | *** source: [[ | ||
</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | |||
− | |||
− | |||
− | |||
− | |||
* [[PWY-6842]] | * [[PWY-6842]] | ||
** '''5''' reactions found over '''9''' reactions in the full pathway | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
Line 58: | Line 43: | ||
** '''4''' reactions found over '''8''' reactions in the full pathway | ** '''4''' reactions found over '''8''' reactions in the full pathway | ||
* [[PWY66-374]] | * [[PWY66-374]] | ||
− | ** '''2''' reactions found over ''' | + | ** '''2''' reactions found over '''7''' reactions in the full pathway |
* [[PWY-7112]] | * [[PWY-7112]] | ||
** '''3''' reactions found over '''4''' reactions in the full pathway | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
− | |||
− | |||
− | |||
− | |||
* [[PWY-7533]] | * [[PWY-7533]] | ||
** '''3''' reactions found over '''9''' reactions in the full pathway | ** '''3''' reactions found over '''9''' reactions in the full pathway | ||
− | + | {{#set: transcription-direction=negative}} | |
− | + | {{#set: right-end-position=86943}} | |
− | + | {{#set: left-end-position=82068}} | |
− | + | {{#set: centisome-position=45.984455 }} | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | {{#set: transcription-direction= | ||
− | {{#set: right-end-position= | ||
− | {{#set: left-end-position= | ||
− | {{#set: centisome-position= | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
Latest revision as of 11:10, 18 March 2021
Contents
Gene SJ22289
- transcription-direction:
- negative
- right-end-position:
- 86943
- left-end-position:
- 82068
- centisome-position:
- 45.984455
Organism(s) associated with this gene
Reaction(s) associated
- GSHTRAN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- GST-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PROSTAGLANDIN-D-SYNTHASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13673
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-15680
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6842
- 5 reactions found over 9 reactions in the full pathway
- PWY-4061
- 4 reactions found over 8 reactions in the full pathway
- PWY66-374
- 2 reactions found over 7 reactions in the full pathway
- PWY-7112
- 3 reactions found over 4 reactions in the full pathway
- PWY-7533
- 3 reactions found over 9 reactions in the full pathway