Difference between revisions of "SJ22304"

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(Created page with "Category:gene == Gene SJ02152 == * transcription-direction: ** positive * right-end-position: ** 41053 * left-end-position: ** 35728 * centisome-position: ** 25.445301...")
(Created page with "Category:gene == Gene SJ03402 == * transcription-direction: ** negative * right-end-position: ** 145335 * left-end-position: ** 117413 * centisome-position: ** 22.346674...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ02152 ==
+
== Gene SJ03402 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 41053
+
** 145335
 
* left-end-position:
 
* left-end-position:
−
** 35728
+
** 117413
 
* centisome-position:
 
* centisome-position:
−
** 25.445301    
+
** 22.346674    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[2.7.10.1-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[CATAL-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[2.7.12.1-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[PEROXID-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PROTEIN-KINASE-RXN]]
+
* [[RXN-14189]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14906]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14240]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: transcription-direction=positive}}
+
* [[RXN-15288]]
−
{{#set: right-end-position=41053}}
+
** Category: [[annotation]]
−
{{#set: left-end-position=35728}}
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: centisome-position=25.445301   }}
+
* [[RXN-17352]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-8635]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN66-1]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-5506]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[DETOX1-PWY-1]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[DETOX1-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7214]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7445]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5466]]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6824]]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5469]]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5461]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY66-162]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=145335}}
 +
{{#set: left-end-position=117413}}
 +
{{#set: centisome-position=22.346674   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=4}}
+
{{#set: nb reaction associated=8}}
 +
{{#set: nb pathway associated=10}}

Revision as of 08:14, 15 March 2021

Gene SJ03402

  • transcription-direction:
    • negative
  • right-end-position:
    • 145335
  • left-end-position:
    • 117413
  • centisome-position:
    • 22.346674

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5506
    • 1 reactions found over 2 reactions in the full pathway
  • DETOX1-PWY-1
    • 4 reactions found over 4 reactions in the full pathway
  • DETOX1-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7214
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7445
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5466
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-6824
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-5469
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-5461
    • 1 reactions found over 1 reactions in the full pathway
  • PWY66-162
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ22304&oldid=119092"