Difference between revisions of "SJ22508"

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(Created page with "Category:gene == Gene SJ04728 == * transcription-direction: ** positive * right-end-position: ** 315846 * left-end-position: ** 308870 * centisome-position: ** 61.02703...")
(Created page with "Category:gene == Gene SJ22508 == * transcription-direction: ** negative * right-end-position: ** 119747 * left-end-position: ** 106768 * centisome-position: ** 60.75062...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ04728 ==
+
== Gene SJ22508 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 315846
+
** 119747
 
* left-end-position:
 
* left-end-position:
−
** 308870
+
** 106768
 
* centisome-position:
 
* centisome-position:
−
** 61.02703    
+
** 60.75062    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[PHOSACETYLTRANS-RXN]]
+
* [[ADDALT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ADENODEAMIN-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RIBOFLAVINSYNDEAM-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RIBOFLAVINSYNREDUC-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7179-1]]
−
* [[PWY-5482]]
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-7179]]
−
* [[PWY0-1312]]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
* [[PWY-6611]]
−
* [[P122-PWY]]
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[P163-PWY]]
 
−
** '''3''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5485]]
 
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[FERMENTATION-PWY]]
+
* [[SALVADEHYPOX-PWY]]
−
** '''11''' reactions found over '''16''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[P3-PWY]]
+
* [[PWY-6609]]
−
** '''3''' reactions found over '''11''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY4LZ-257]]
+
* [[PWY0-1296]]
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[METH-ACETATE-PWY]]
+
* [[RIBOSYN2-PWY]]
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-1281]]
+
{{#set: transcription-direction=negative}}
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
{{#set: right-end-position=119747}}
−
* [[PWY-6637]]
+
{{#set: left-end-position=106768}}
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
{{#set: centisome-position=60.75062   }}
−
* [[P161-PWY]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5497]]
 
−
** '''10''' reactions found over '''24''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=315846}}
 
−
{{#set: left-end-position=308870}}
 
−
{{#set: centisome-position=61.02703   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=13}}
+
{{#set: nb pathway associated=7}}

Latest revision as of 11:10, 18 March 2021

Gene SJ22508

  • transcription-direction:
    • negative
  • right-end-position:
    • 119747
  • left-end-position:
    • 106768
  • centisome-position:
    • 60.75062

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7179-1
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7179
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6611
    • 2 reactions found over 3 reactions in the full pathway
  • SALVADEHYPOX-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6609
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-1296
    • 6 reactions found over 6 reactions in the full pathway
  • RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ22508&oldid=136231"