Difference between revisions of "SN-GERANYLGERANYLGLYCERYL-1-PHOSPHATE"

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(Created page with "Category:gene == Gene SJ14704 == * transcription-direction: ** negative * right-end-position: ** 83820 * left-end-position: ** 78019 * centisome-position: ** 25.118479...")
(Created page with "Category:metabolite == Metabolite CPD-17383 == * common-name: ** (2z,9z,12z,15z,18z,21z)-tetracosahexaenoyl-coa * smiles: ** ccc=ccc=ccc=ccc=ccc=ccccccc=cc(sccnc(=o)ccnc(=...")
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ14704 ==
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== Metabolite CPD-17383 ==
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* transcription-direction:
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* common-name:
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** negative
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** (2z,9z,12z,15z,18z,21z)-tetracosahexaenoyl-coa
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* right-end-position:
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* smiles:
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** 83820
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** ccc=ccc=ccc=ccc=ccc=ccccccc=cc(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-])=o
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* left-end-position:
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* inchi-key:
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** 78019
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** mmzjvinjfsrjok-cynjbpnesa-j
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* centisome-position:
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* molecular-weight:
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** 25.118479   
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** 1102.034
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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* [[RXN-16130]]
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* [[2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RXN]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=(2z,9z,12z,15z,18z,21z)-tetracosahexaenoyl-coa}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: inchi-key=inchikey=mmzjvinjfsrjok-cynjbpnesa-j}}
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* [[3PGAREARR-RXN]]
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{{#set: molecular-weight=1102.034}}
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== Pathway(s) associated ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[PWY-6142]]
 
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** '''10''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-7003]]
 
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** '''8''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-7218]]
 
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** '''7''' reactions found over '''4''' reactions in the full pathway
 
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* [[GLYCOLYSIS]]
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[P341-PWY]]
 
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** '''6''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-5723]]
 
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** '''10''' reactions found over '''10''' reactions in the full pathway
 
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* [[P124-PWY]]
 
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** '''12''' reactions found over '''15''' reactions in the full pathway
 
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* [[PWY-2221]]
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-5484]]
 
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** '''10''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-1042]]
 
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** '''9''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-6886]]
 
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** '''8''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-6901]]
 
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** '''10''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7124]]
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
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* [[GLUCONEO-PWY]]
 
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** '''12''' reactions found over '''13''' reactions in the full pathway
 
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</div>
 
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{{#set: transcription-direction=negative}}
 
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{{#set: right-end-position=83820}}
 
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{{#set: left-end-position=78019}}
 
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{{#set: centisome-position=25.118479    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=3}}
 
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{{#set: nb pathway associated=14}}
 

Revision as of 20:30, 18 December 2020

Metabolite CPD-17383

  • common-name:
    • (2z,9z,12z,15z,18z,21z)-tetracosahexaenoyl-coa
  • smiles:
    • ccc=ccc=ccc=ccc=ccc=ccccccc=cc(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-])=o
  • inchi-key:
    • mmzjvinjfsrjok-cynjbpnesa-j
  • molecular-weight:
    • 1102.034

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

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