Difference between revisions of "SPMDtmi"

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(Created page with "Category:reaction == Reaction PRPPAMIDOTRANS-RXN == * direction: ** reversible * common-name: ** amidophosphoribosyltransferase ** amidophosphoribosyl transferase * ec-num...")
(Created page with "Category:reaction == Reaction AMP-DEPHOSPHORYLATION-RXN == * direction: ** left-to-right * common-name: ** amp phosphatase ** 5'-nucleotidase * ec-number: ** [http://enzym...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PRPPAMIDOTRANS-RXN ==
+
== Reaction AMP-DEPHOSPHORYLATION-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** amidophosphoribosyltransferase
+
** amp phosphatase
−
** amidophosphoribosyl transferase
+
** 5'-nucleotidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.14 ec-2.4.2.14]
+
** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[GLN]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADENOSINE]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04979]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ18895]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ15366]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15928]]
+
* Gene: [[SJ09030]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ20754]]
+
* Gene: [[SJ18402]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16098]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
+
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
−
** '''6''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
 
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7282]], 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis:
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14908 14908]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29376 29376]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00183 R00183]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P28173 P28173]
+
** [http://www.uniprot.org/uniprot/P06196 P06196]
−
** [http://www.uniprot.org/uniprot/P35433 P35433]
+
** [http://www.uniprot.org/uniprot/P21588 P21588]
−
** [http://www.uniprot.org/uniprot/Q06203 Q06203]
+
** [http://www.uniprot.org/uniprot/O34313 O34313]
−
** [http://www.uniprot.org/uniprot/O29388 O29388]
+
** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
−
** [http://www.uniprot.org/uniprot/O67236 O67236]
+
** [http://www.uniprot.org/uniprot/O29385 O29385]
−
** [http://www.uniprot.org/uniprot/P65829 P65829]
+
** [http://www.uniprot.org/uniprot/P44569 P44569]
−
** [http://www.uniprot.org/uniprot/O57979 O57979]
+
** [http://www.uniprot.org/uniprot/O83142 O83142]
−
** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
+
** [http://www.uniprot.org/uniprot/P49902 P49902]
−
** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
+
** [http://www.uniprot.org/uniprot/P22848 P22848]
−
** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
+
** [http://www.uniprot.org/uniprot/Q05927 Q05927]
−
** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
+
** [http://www.uniprot.org/uniprot/P21589 P21589]
−
** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
+
** [http://www.uniprot.org/uniprot/P29240 P29240]
−
** [http://www.uniprot.org/uniprot/Q57657 Q57657]
+
** [http://www.uniprot.org/uniprot/P07024 P07024]
−
** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/O26742 O26742]
+
{{#set: common-name=5'-nucleotidase|amp phosphatase}}
−
** [http://www.uniprot.org/uniprot/P43854 P43854]
+
{{#set: ec-number=ec-3.1.3.5}}
−
** [http://www.uniprot.org/uniprot/P35853 P35853]
+
{{#set: nb gene associated=5}}
−
** [http://www.uniprot.org/uniprot/P41390 P41390]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/Q27601 Q27601]
 
−
** [http://www.uniprot.org/uniprot/Q38999 Q38999]
 
−
** [http://www.uniprot.org/uniprot/P04046 P04046]
 
−
** [http://www.uniprot.org/uniprot/Q55621 Q55621]
 
−
** [http://www.uniprot.org/uniprot/Q55038 Q55038]
 
−
** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
 
−
** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
 
−
** [http://www.uniprot.org/uniprot/P52418 P52418]
 
−
** [http://www.uniprot.org/uniprot/P52419 P52419]
 
−
** [http://www.uniprot.org/uniprot/Q22134 Q22134]
 
−
** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
 
−
** [http://www.uniprot.org/uniprot/P00497 P00497]
 
−
** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=amidophosphoribosyltransferase|amidophosphoribosyl transferase}}
 
−
{{#set: ec-number=ec-2.4.2.14}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=4}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:20, 15 January 2021

Reaction AMP-DEPHOSPHORYLATION-RXN

  • direction:
    • left-to-right
  • common-name:
    • amp phosphatase
    • 5'-nucleotidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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