Difference between revisions of "SPMDtmi"

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(Created page with "Category:reaction == Reaction AMP-DEPHOSPHORYLATION-RXN == * direction: ** left-to-right * common-name: ** amp phosphatase ** 5'-nucleotidase * ec-number: ** [http://enzym...")
(Created page with "Category:reaction == Reaction KETOLACTOSE-RXN == * direction: ** left-to-right * common-name: ** beta-galactosidase ** 3-ketolactose hydrolase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction AMP-DEPHOSPHORYLATION-RXN ==
+
== Reaction KETOLACTOSE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** amp phosphatase
+
** beta-galactosidase
−
** 5'-nucleotidase
+
** 3-ketolactose hydrolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
+
** [http://enzyme.expasy.org/EC/3.2.1.23 ec-3.2.1.23]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADENOSINE]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[3-KETOLACTOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-1242]][c] '''+''' 1 [[Glucopyranose]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ14193]]
−
* Gene: [[SJ18895]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ15366]]
+
* Gene: [[SJ04558]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09030]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ18402]]
+
* Gene: [[SJ10277]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16098]]
+
* Gene: [[SJ03139]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
+
* [[LACTOSEUTIL-PWY]], lactose degradation II:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR105374
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29376 29376]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33788 33788]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00183 R00183]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04783 R04783]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06196 P06196]
+
** [http://www.uniprot.org/uniprot/P06219 P06219]
−
** [http://www.uniprot.org/uniprot/P21588 P21588]
+
** [http://www.uniprot.org/uniprot/P11175 P11175]
−
** [http://www.uniprot.org/uniprot/O34313 O34313]
+
** [http://www.uniprot.org/uniprot/P19668 P19668]
−
** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
+
** [http://www.uniprot.org/uniprot/P20043 P20043]
−
** [http://www.uniprot.org/uniprot/O29385 O29385]
+
** [http://www.uniprot.org/uniprot/P16278 P16278]
−
** [http://www.uniprot.org/uniprot/P44569 P44569]
+
** [http://www.uniprot.org/uniprot/P23780 P23780]
−
** [http://www.uniprot.org/uniprot/O83142 O83142]
+
** [http://www.uniprot.org/uniprot/P24131 P24131]
−
** [http://www.uniprot.org/uniprot/P49902 P49902]
+
** [http://www.uniprot.org/uniprot/Q02603 Q02603]
−
** [http://www.uniprot.org/uniprot/P22848 P22848]
+
** [http://www.uniprot.org/uniprot/Q53790 Q53790]
−
** [http://www.uniprot.org/uniprot/Q05927 Q05927]
+
** [http://www.uniprot.org/uniprot/P23989 P23989]
−
** [http://www.uniprot.org/uniprot/P21589 P21589]
+
** [http://www.uniprot.org/uniprot/P48982 P48982]
−
** [http://www.uniprot.org/uniprot/P29240 P29240]
+
** [http://www.uniprot.org/uniprot/Q9UYG5 Q9UYG5]
−
** [http://www.uniprot.org/uniprot/P07024 P07024]
+
** [http://www.uniprot.org/uniprot/Q02604 Q02604]
 +
** [http://www.uniprot.org/uniprot/P0AC73 P0AC73]
 +
** [http://www.uniprot.org/uniprot/O58247 O58247]
 +
** [http://www.uniprot.org/uniprot/Q9UYH2 Q9UYH2]
 +
** [http://www.uniprot.org/uniprot/P00722 P00722]
 +
** [http://www.uniprot.org/uniprot/P06864 P06864]
 +
** [http://www.uniprot.org/uniprot/Q47170 Q47170]
 +
** [http://www.uniprot.org/uniprot/Q59140 Q59140]
 +
** [http://www.uniprot.org/uniprot/P00723 P00723]
 +
** [http://www.uniprot.org/uniprot/P94248 P94248]
 +
** [http://www.uniprot.org/uniprot/O31341 O31341]
 +
** [http://www.uniprot.org/uniprot/P22498 P22498]
 +
** [http://www.uniprot.org/uniprot/Q02401 Q02401]
 +
** [http://www.uniprot.org/uniprot/P26257 P26257]
 +
** [http://www.uniprot.org/uniprot/Q59422 Q59422]
 +
** [http://www.uniprot.org/uniprot/P30812 P30812]
 +
** [http://www.uniprot.org/uniprot/Q12660 Q12660]
 +
** [http://www.uniprot.org/uniprot/P45582 P45582]
 +
** [http://www.uniprot.org/uniprot/P49676 P49676]
 +
** [http://www.uniprot.org/uniprot/Q9SCV3 Q9SCV3]
 +
** [http://www.uniprot.org/uniprot/Q9SZI5 Q9SZI5]
 +
** [http://www.uniprot.org/uniprot/O81100 O81100]
 +
** [http://www.uniprot.org/uniprot/Q42150 Q42150]
 +
** [http://www.uniprot.org/uniprot/P48980 P48980]
 +
** [http://www.uniprot.org/uniprot/P48981 P48981]
 +
** [http://www.uniprot.org/uniprot/O86616 O86616]
 +
** [http://www.uniprot.org/uniprot/P70753 P70753]
 +
** [http://www.uniprot.org/uniprot/P29853 P29853]
 +
** [http://www.uniprot.org/uniprot/P94804 P94804]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=5'-nucleotidase|amp phosphatase}}
+
{{#set: common-name=beta-galactosidase|3-ketolactose hydrolase}}
−
{{#set: ec-number=ec-3.1.3.5}}
+
{{#set: ec-number=ec-3.2.1.23}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:32, 15 March 2021

Reaction KETOLACTOSE-RXN

  • direction:
    • left-to-right
  • common-name:
    • beta-galactosidase
    • 3-ketolactose hydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • LACTOSEUTIL-PWY, lactose degradation II:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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