Difference between revisions of "SPMDtmi"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.72-RXN 2.1.1.72-RXN] == * direction: ** left-to-right * common-name: ** site-specific dna-met...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-28 RXN66-28] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.72-RXN 2.1.1.72-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-28 RXN66-28] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** site-specific dna-methyltransferase (adenine-specific)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.72 ec-2.1.1.72]
+
** [http://enzyme.expasy.org/EC/1.3.1.72 ec-1.3.1.72]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DNA-Adenines]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DNA-Containing-N6-Methyladenine]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DESMOSTEROL-CPD]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CHOLESTEROL]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09110]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-4 PWY66-4]
 +
** '''14''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15198 15198]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02961 R02961]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01457 R01457]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q7B7V5 Q7B7V5]
 
−
** [http://www.uniprot.org/uniprot/P44414 P44414]
 
−
** [http://www.uniprot.org/uniprot/Q57168 Q57168]
 
−
** [http://www.uniprot.org/uniprot/Q9PIS1 Q9PIS1]
 
−
** [http://www.uniprot.org/uniprot/P44431 P44431]
 
−
** [http://www.uniprot.org/uniprot/P95510 P95510]
 
−
** [http://www.uniprot.org/uniprot/P29749 P29749]
 
−
** [http://www.uniprot.org/uniprot/P14385 P14385]
 
−
** [http://www.uniprot.org/uniprot/P43422 P43422]
 
−
** [http://www.uniprot.org/uniprot/Q47911 Q47911]
 
−
** [http://www.uniprot.org/uniprot/P21311 P21311]
 
−
** [http://www.uniprot.org/uniprot/P14751 P14751]
 
−
** [http://www.uniprot.org/uniprot/P14827 P14827]
 
−
** [http://www.uniprot.org/uniprot/P25240 P25240]
 
−
** [http://www.uniprot.org/uniprot/P25239 P25239]
 
−
** [http://www.uniprot.org/uniprot/P29538 P29538]
 
−
** [http://www.uniprot.org/uniprot/Q03055 Q03055]
 
−
** [http://www.uniprot.org/uniprot/Q51829 Q51829]
 
−
** [http://www.uniprot.org/uniprot/P25238 P25238]
 
−
** [http://www.uniprot.org/uniprot/P35516 P35516]
 
−
** [http://www.uniprot.org/uniprot/P33563 P33563]
 
−
** [http://www.uniprot.org/uniprot/P43641 P43641]
 
−
** [http://www.uniprot.org/uniprot/P45454 P45454]
 
−
** [http://www.uniprot.org/uniprot/P50193 P50193]
 
−
** [http://www.uniprot.org/uniprot/Q56004 Q56004]
 
−
** [http://www.uniprot.org/uniprot/P73682 P73682]
 
−
** [http://www.uniprot.org/uniprot/P31118 P31118]
 
−
** [http://www.uniprot.org/uniprot/O41063 O41063]
 
−
** [http://www.uniprot.org/uniprot/P12427 P12427]
 
−
** [http://www.uniprot.org/uniprot/P04392 P04392]
 
−
** [http://www.uniprot.org/uniprot/P0AEE8 P0AEE8]
 
−
** [http://www.uniprot.org/uniprot/P08957 P08957]
 
−
** [http://www.uniprot.org/uniprot/P00472 P00472]
 
−
** [http://www.uniprot.org/uniprot/P04393 P04393]
 
−
** [http://www.uniprot.org/uniprot/P00473 P00473]
 
−
** [http://www.uniprot.org/uniprot/P24582 P24582]
 
−
** [http://www.uniprot.org/uniprot/P00474 P00474]
 
−
** [http://www.uniprot.org/uniprot/P04043 P04043]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=site-specific dna-methyltransferase (adenine-specific)}}
+
{{#set: ec-number=ec-1.3.1.72}}
−
{{#set: ec-number=ec-2.1.1.72}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Revision as of 09:30, 27 August 2019

Reaction RXN66-28

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-4, cholesterol biosynthesis III (via desmosterol): PWY66-4
    • 14 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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