Difference between revisions of "SPMDtmi"

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(Created page with "Category:reaction == Reaction RXN-9523 == * direction: ** left-to-right * common-name: ** 3-oxo-octanoyl-[acyl-carrier protein] synthase ** 3-oxoacyl-[acyl-carrier-protein...")
(Created page with "Category:reaction == Reaction GLUTAMIDOTRANS-RXN == * direction: ** left-to-right * common-name: ** imidazoleglycerol-phosphate synthase * ec-number: ** [http://enzyme.exp...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9523 ==
+
== Reaction GLUTAMIDOTRANS-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxo-octanoyl-[acyl-carrier protein] synthase
+
** imidazoleglycerol-phosphate synthase
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/4.3.2.m2 ec-4.3.2.m2]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
+
* synonymous:
 +
** imidazole glycerol phosphate synthase cyclase subunit (ec 4.1.3.-)
 +
** imidazole glycerol phosphate synthase amidotransferase subunit (ec 2.4.2.-)
 +
** imidazole glycerol phosphate synthase cyclase subunit
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Hexanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-Oxo-octanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[GLN]][c] '''+''' 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c] '''=>''' 1 [[AICAR]][c] '''+''' 1 [[D-ERYTHRO-IMIDAZOLE-GLYCEROL-P]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ19186]]
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10624]]
+
* Gene: [[SJ12953]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ00005]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15984]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
+
* [[HISTSYN-PWY]], L-histidine biosynthesis:
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24793 24793]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04558 R04558]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase|3-oxo-octanoyl-[acyl-carrier protein] synthase}}
+
{{#set: common-name=imidazoleglycerol-phosphate synthase}}
−
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
+
{{#set: ec-number=ec-4.3.2.m2}}
−
{{#set: nb gene associated=7}}
+
{{#set: synonymous=imidazole glycerol phosphate synthase amidotransferase subunit (ec 2.4.2.-)|imidazole glycerol phosphate synthase cyclase subunit|imidazole glycerol phosphate synthase cyclase subunit (ec 4.1.3.-)}}
 +
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:14, 14 January 2021

Reaction GLUTAMIDOTRANS-RXN

  • direction:
    • left-to-right
  • common-name:
    • imidazoleglycerol-phosphate synthase
  • ec-number:
  • synonymous:
    • imidazole glycerol phosphate synthase cyclase subunit (ec 4.1.3.-)
    • imidazole glycerol phosphate synthase amidotransferase subunit (ec 2.4.2.-)
    • imidazole glycerol phosphate synthase cyclase subunit

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HISTSYN-PWY, L-histidine biosynthesis:
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SPMDtmi&oldid=88045"