Difference between revisions of "SUC"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRROLINECARBREDUCT-RXN PYRROLINECARBREDUCT-RXN] == * direction: ** left-to-right * common-name: **...")
(Created page with "Category:metabolite == Metabolite SUC == * common-name: ** succinate * smiles: ** c(c([o-])=o)cc([o-])=o * inchi-key: ** kdyfgrwqoybrfd-uhfffaoysa-l * molecular-weight: **...")
 
(8 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRROLINECARBREDUCT-RXN PYRROLINECARBREDUCT-RXN] ==
+
== Metabolite SUC ==
−
* direction:
 
−
** left-to-right
 
 
* common-name:
 
* common-name:
−
** pyrroline-5-carboxylate reductase
+
** succinate
−
* ec-number:
+
* smiles:
−
** [http://enzyme.expasy.org/EC/1.5.1.2 ec-1.5.1.2]
+
** c(c([o-])=o)cc([o-])=o
−
== Reaction formula ==
+
* inchi-key:
−
* 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[PRO]][c]
+
** kdyfgrwqoybrfd-uhfffaoysa-l
−
== Gene(s) associated with this reaction  ==
+
* molecular-weight:
−
* Gene: [[SJ22264]]
+
** 116.073
−
** Category: [[annotation]]
+
== Reaction(s) known to consume the compound ==
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[FUMARATE-REDUCTASE-NADH-RXN]]
−
* Gene: [[SJ15062]]
+
* [[ISOCIT-CLEAV-RXN]]
−
** Category: [[annotation]]
+
* [[O-SUCCHOMOSERLYASE-RXN]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[RXN-14971]]
−
** Category: [[orthology]]
+
* [[RXN-15378]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[RXN-17811]]
−
* Gene: [[SJ11815]]
+
* [[RXN-9384]]
−
** Category: [[annotation]]
+
* [[SUCCCOASYN-RXN]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
−
** Category: [[orthology]]
+
* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[SUCDH_LPAREN_q8_RPAREN_m]]
−
== Pathway(s)  ==
+
* [[SUCDHm]]
−
* [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341]
+
* [[SUCFUMtmr]]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
* [[SUCL_LPAREN_gdp_RPAREN_m]]
−
* [[PROSYN-PWY]], L-proline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PROSYN-PWY PROSYN-PWY]
+
* [[biomass_rxn]]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
== Reaction(s) known to produce the compound ==
−
* [[PWY-6344]], L-ornithine degradation II (Stickland reaction): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6344 PWY-6344]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-PRO-PWY ARG-PRO-PWY]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
== Reconstruction information  ==
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
== External links  ==
 
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
+
* [[1.14.11.1-RXN]]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14107 14107]
+
* [[1.14.11.18-RXN]]
−
* LIGAND-RXN:
+
* [[1.14.11.2-RXN]]
−
** [http://www.genome.jp/dbget-bin/www_bget?R01248 R01248]
+
* [[FUMARATE-REDUCTASE-NADH-RXN]]
−
** [http://www.genome.jp/dbget-bin/www_bget?R01251 R01251]
+
* [[ISOCIT-CLEAV-RXN]]
−
* UNIPROT:
+
* [[METBALT-RXN]]
−
** [http://www.uniprot.org/uniprot/P32322 P32322]
+
* [[MHPCHYDROL-RXN]]
−
** [http://www.uniprot.org/uniprot/P27771 P27771]
+
* [[NARINGENIN-3-DIOXYGENASE-RXN]]
−
** [http://www.uniprot.org/uniprot/Q9CEF7 Q9CEF7]
+
* [[O-SUCCHOMOSERLYASE-RXN]]
−
** [http://www.uniprot.org/uniprot/P14383 P14383]
+
* [[PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN]]
−
** [http://www.uniprot.org/uniprot/Q9PNL8 Q9PNL8]
+
* [[RXN-113]]
−
** [http://www.uniprot.org/uniprot/Q9JWW2 Q9JWW2]
+
* [[RXN-11320]]
−
** [http://www.uniprot.org/uniprot/Q12740 Q12740]
+
* [[RXN-11321]]
−
** [http://www.uniprot.org/uniprot/P22008 P22008]
+
* [[RXN-115]]
−
** [http://www.uniprot.org/uniprot/P54904 P54904]
+
* [[RXN-12353]]
−
** [http://www.uniprot.org/uniprot/P0A9L8 P0A9L8]
+
* [[RXN-13186]]
−
** [http://www.uniprot.org/uniprot/P17817 P17817]
+
* [[RXN-171]]
−
** [http://www.uniprot.org/uniprot/P32263 P32263]
+
* [[RXN-17811]]
−
** [http://www.uniprot.org/uniprot/Q12641 Q12641]
+
* [[RXN-527]]
−
** [http://www.uniprot.org/uniprot/P46725 P46725]
+
* [[RXN-602]]
−
** [http://www.uniprot.org/uniprot/P74572 P74572]
+
* [[RXN-6550]]
−
** [http://www.uniprot.org/uniprot/Q04708 Q04708]
+
* [[RXN-7648]]
 +
* [[RXN-7775]]
 +
* [[RXN-7922]]
 +
* [[RXN-8450]]
 +
* [[RXN-8660]]
 +
* [[RXN-8661]]
 +
* [[RXN-9384]]
 +
* [[RXN-9772]]
 +
* [[RXN0-5293]]
 +
* [[RXN0-7090]]
 +
* [[RXN0-984]]
 +
* [[RXN0-985]]
 +
* [[RXN0-986]]
 +
* [[RXN1F-162]]
 +
* [[RXN1F-163]]
 +
* [[RXN1F-165]]
 +
* [[RXN1F-167]]
 +
* [[RXN1F-168]]
 +
* [[RXN1F-93]]
 +
* [[RXN490-3641]]
 +
* [[RXN66-470]]
 +
* [[SSNOm]]
 +
* [[SUCCCOASYN-RXN]]
 +
* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
 +
* [[SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
 +
* [[SUCCSEMIALDDEHYDROG-RXN]]
 +
* [[SUCDH_LPAREN_q8_RPAREN_m]]
 +
* [[SUCFUMtmr]]
 +
* [[SUCHMSSELCYSL]]
 +
* [[SUCHMSSELCYSLh]]
 +
* [[SUCL_LPAREN_gdp_RPAREN_m]]
 +
* [[TRIMETHYLLYSINE-DIOXYGENASE-RXN]]
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
== Reaction(s) of unknown directionality ==
−
{{#set: common-name=pyrroline-5-carboxylate reductase}}
+
{{#set: common-name=succinate}}
−
{{#set: ec-number=ec-1.5.1.2}}
+
{{#set: inchi-key=inchikey=kdyfgrwqoybrfd-uhfffaoysa-l}}
−
{{#set: nb gene associated=3}}
+
{{#set: molecular-weight=116.073}}
−
{{#set: nb pathway associated=5}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:15, 18 March 2021

Metabolite SUC

  • common-name:
    • succinate
  • smiles:
    • c(c([o-])=o)cc([o-])=o
  • inchi-key:
    • kdyfgrwqoybrfd-uhfffaoysa-l
  • molecular-weight:
    • 116.073

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SUC&oldid=138431"