Difference between revisions of "SUCCCOASYN-RXN"

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(Created page with "Category:reaction == Reaction UTCY == * direction: ** left-to-right * common-name: ** utp:cytidine 5'-phosphotransferase == Reaction formula == * 1.0 CYTIDINE[c] '''+'...")
(Created page with "Category:reaction == Reaction SUCCCOASYN-RXN == * direction: ** reversible * common-name: ** succinyl-coa synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.5 e...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UTCY ==
+
== Reaction SUCCCOASYN-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** utp:cytidine 5'-phosphotransferase
+
** succinyl-coa synthetase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.5 ec-6.2.1.5]
 +
* synonymous:
 +
** succinyl coa synthesis
 +
** succinate thiokinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CYTIDINE]][c] '''+''' 1.0 [[UTP]][c] '''=>''' 1.0 [[CMP]][c] '''+''' 1.0 [[PROTON]][c] '''+''' 1.0 [[UDP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02034]]
+
* Gene: [[SJ21782]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15690]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03269]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[P42-PWY]], incomplete reductive TCA cycle:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II:
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals):
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase):
 +
** '''10''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5538]], pyruvate fermentation to acetate VI:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5537]], pyruvate fermentation to acetate V:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic):
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle:
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=utp:cytidine 5'-phosphotransferase}}
+
* METANETX-RXN : MNXR104635
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17664 17664]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O28098 O28098]
 +
** [http://www.uniprot.org/uniprot/P53594 P53594]
 +
** [http://www.uniprot.org/uniprot/O28733 O28733]
 +
** [http://www.uniprot.org/uniprot/P45101 P45101]
 +
** [http://www.uniprot.org/uniprot/P45102 P45102]
 +
** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
 +
** [http://www.uniprot.org/uniprot/Q58643 Q58643]
 +
** [http://www.uniprot.org/uniprot/O26663 O26663]
 +
** [http://www.uniprot.org/uniprot/P80886 P80886]
 +
** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
 +
** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
 +
** [http://www.uniprot.org/uniprot/P80865 P80865]
 +
** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
 +
** [http://www.uniprot.org/uniprot/O67729 O67729]
 +
** [http://www.uniprot.org/uniprot/O67546 O67546]
 +
** [http://www.uniprot.org/uniprot/P53593 P53593]
 +
** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
 +
** [http://www.uniprot.org/uniprot/P0A836 P0A836]
 +
** [http://www.uniprot.org/uniprot/O82662 O82662]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=succinyl-coa synthetase}}
 +
{{#set: ec-number=ec-6.2.1.5}}
 +
{{#set: synonymous=succinyl coa synthesis|succinate thiokinase}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=12}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction SUCCCOASYN-RXN

  • direction:
    • reversible
  • common-name:
    • succinyl-coa synthetase
  • ec-number:
  • synonymous:
    • succinyl coa synthesis
    • succinate thiokinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P42-PWY, incomplete reductive TCA cycle:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II:
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate synthase):
    • 10 reactions found over 9 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-5538, pyruvate fermentation to acetate VI:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5537, pyruvate fermentation to acetate V:
    • 2 reactions found over 2 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 9 reactions found over 10 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial):
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 11 reactions found over 19 reactions in the full pathway

Reconstruction information

External links






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