Difference between revisions of "SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN"

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(Created page with "Category:reaction == Reaction GLUTACONYL-COA-DECARBOXYLASE-RXN == * direction: ** reversible * common-name: ** glutaconyl-coa decarboxylase * ec-number: ** [http://enzyme....")
(Created page with "Category:reaction == Reaction RXN-527 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.23 ec-1.14.11.23] == Reaction formula == * 1 ...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTACONYL-COA-DECARBOXYLASE-RXN ==
+
== Reaction RXN-527 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** glutaconyl-coa decarboxylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.70 ec-4.1.1.70]
+
** [http://enzyme.expasy.org/EC/1.14.11.23 ec-1.14.11.23]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLUTACONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CROTONYL-COA]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-474]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-520]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07909]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[annotation]]
+
* Gene: [[SJ07557]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14670]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14677]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14675]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14672]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08018]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
+
* [[PWY-5390]], rutin biosynthesis:
−
** '''6''' reactions found over '''15''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5177]], glutaryl-CoA degradation:
+
* [[PWY-3101]], flavonol biosynthesis:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
+
* [[PWY-6787]], flavonoid biosynthesis (in equisetum):
−
** '''7''' reactions found over '''11''' reactions in the full pathway
+
** '''6''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR107338
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23972 23972]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03028 R03028]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02160 R02160]
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutaconyl-coa decarboxylase}}
+
{{#set: ec-number=ec-1.14.11.23}}
−
{{#set: ec-number=ec-4.1.1.70}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 08:33, 15 March 2021

Reaction RXN-527

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5390, rutin biosynthesis:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-3101, flavonol biosynthesis:
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum):
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR107338
  • LIGAND-RXN:





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