Difference between revisions of "SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN"

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(Created page with "Category:reaction == Reaction GLUTACONYL-COA-DECARBOXYLASE-RXN == * direction: ** reversible * common-name: ** glutaconyl-coa decarboxylase * ec-number: ** [http://enzyme....")
(Created page with "Category:reaction == Reaction SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN == * direction: ** left-to-right * common-name: ** succinate:quinone oxidoreductase * ec-number: ** [h...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTACONYL-COA-DECARBOXYLASE-RXN ==
+
== Reaction SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** glutaconyl-coa decarboxylase
+
** succinate:quinone oxidoreductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.70 ec-4.1.1.70]
+
** [http://enzyme.expasy.org/EC/1.3.5.1 ec-1.3.5.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLUTACONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CROTONYL-COA]][c]
+
* 1 [[SUC]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[FUM]][c] '''+''' 1 [[Ubiquinols]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07909]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ02694]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02118]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17484]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18770]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19480]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01012]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
+
* [[PWY-3781]], aerobic respiration I (cytochrome c):
−
** '''6''' reactions found over '''15''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5177]], glutaryl-CoA degradation:
+
* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast):
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
+
* [[PWY0-1353]], succinate to cytochrome bd oxidase electron transfer:
−
** '''7''' reactions found over '''11''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals):
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-4302]], aerobic respiration III (alternative oxidase pathway):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-1329]], succinate to cytochrome bo oxidase electron transfer:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR123892
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23972 23972]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13714 13714]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03028 R03028]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02164 R02164]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=glutaconyl-coa decarboxylase}}
+
** [http://www.uniprot.org/uniprot/P35720 P35720]
−
{{#set: ec-number=ec-4.1.1.70}}
+
** [http://www.uniprot.org/uniprot/Q26266 Q26266]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/P21913 P21913]
−
{{#set: nb pathway associated=3}}
+
** [http://www.uniprot.org/uniprot/Q9ZZR2 Q9ZZR2]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P21911 P21911]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9ZEA1 Q9ZEA1]
 +
** [http://www.uniprot.org/uniprot/Q9PI67 Q9PI67]
 +
** [http://www.uniprot.org/uniprot/P21912 P21912]
 +
** [http://www.uniprot.org/uniprot/P31040 P31040]
 +
** [http://www.uniprot.org/uniprot/Q9CQA3 Q9CQA3]
 +
** [http://www.uniprot.org/uniprot/P21801 P21801]
 +
** [http://www.uniprot.org/uniprot/P35721 P35721]
 +
** [http://www.uniprot.org/uniprot/P32420 P32420]
 +
** [http://www.uniprot.org/uniprot/Q00711 Q00711]
 +
** [http://www.uniprot.org/uniprot/P47052 P47052]
 +
** [http://www.uniprot.org/uniprot/P48932 P48932]
 +
** [http://www.uniprot.org/uniprot/P48934 P48934]
 +
** [http://www.uniprot.org/uniprot/P48935 P48935]
 +
** [http://www.uniprot.org/uniprot/P48933 P48933]
 +
** [http://www.uniprot.org/uniprot/P73723 P73723]
 +
** [http://www.uniprot.org/uniprot/P80481 P80481]
 +
** [http://www.uniprot.org/uniprot/P80482 P80482]
 +
** [http://www.uniprot.org/uniprot/P80480 P80480]
 +
** [http://www.uniprot.org/uniprot/Q9T584 Q9T584]
 +
** [http://www.uniprot.org/uniprot/P80479 P80479]
 +
** [http://www.uniprot.org/uniprot/P80478 P80478]
 +
** [http://www.uniprot.org/uniprot/Q09508 Q09508]
 +
** [http://www.uniprot.org/uniprot/Q59659 Q59659]
 +
** [http://www.uniprot.org/uniprot/Q9UTJ7 Q9UTJ7]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T50081 T50081]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46878 T46878]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41753 T41753]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T37633 T37633]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11245 T11245]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11229 T11229]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11218 T11218]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78180 S78180]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78179 S78179]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78178 S78178]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74810 S74810]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62756 S62756]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62755 S62755]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59115 S59115]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S59114 S59114]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56817 S56817]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S34793 S34793]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26978 S26978]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S25968 S25968]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=RDBYIS RDBYIS]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PT0094 PT0094]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0336 JX0336]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38895 I38895]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D81388 D81388]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D71712 D71712]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D32394 D32394]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C32394 C32394]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B58930 B58930]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B32394 B32394]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56660 A56660]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A45159 A45159]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A42792 A42792]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=succinate:quinone oxidoreductase}}
 +
{{#set: ec-number=ec-1.3.5.1}}
 +
{{#set: nb gene associated=6}}
 +
{{#set: nb pathway associated=6}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN

  • direction:
    • left-to-right
  • common-name:
    • succinate:quinone oxidoreductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3781, aerobic respiration I (cytochrome c):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7279, aerobic respiration II (cytochrome c) (yeast):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-1353, succinate to cytochrome bd oxidase electron transfer:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-4302, aerobic respiration III (alternative oxidase pathway):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY0-1329, succinate to cytochrome bo oxidase electron transfer:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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