Difference between revisions of "SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction TransportSeed-CU+ == * direction: ** left-to-right == Reaction formula == * 1.0 CU+[e] '''=>''' 1.0 CU+[c] == Gene(s) associated with...")
(Created page with "Category:reaction == Reaction 3.1.26.5-RXN == * direction: ** left-to-right * common-name: ** ribonuclease * ec-number: ** [http://enzyme.expasy.org/EC/3.1.26.5 ec-3.1.26....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TransportSeed-CU+ ==
+
== Reaction 3.1.26.5-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** ribonuclease
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.1.26.5 ec-3.1.26.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CU+]][e] '''=>''' 1.0 [[CU+]][c]
+
* 1 [[CPD0-2352]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD0-2353]][c] '''+''' 1 [[tRNA-fragment]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ17442]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06697]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09263]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10376]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17040]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11313]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06336]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19585]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ04162]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17384]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16938]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07712]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY0-1479]], tRNA processing:
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q02773 Q02773]
 +
** [http://www.uniprot.org/uniprot/P41812 P41812]
 +
** [http://www.uniprot.org/uniprot/P0A5X8 P0A5X8]
 +
** [http://www.uniprot.org/uniprot/P48206 P48206]
 +
** [http://www.uniprot.org/uniprot/Q9JW46 Q9JW46]
 +
** [http://www.uniprot.org/uniprot/Q9PNX5 Q9PNX5]
 +
** [http://www.uniprot.org/uniprot/Q9CJ73 Q9CJ73]
 +
** [http://www.uniprot.org/uniprot/P29433 P29433]
 +
** [http://www.uniprot.org/uniprot/P25817 P25817]
 +
** [http://www.uniprot.org/uniprot/P22835 P22835]
 +
** [http://www.uniprot.org/uniprot/P25814 P25814]
 +
** [http://www.uniprot.org/uniprot/P0A7Y8 P0A7Y8]
 +
** [http://www.uniprot.org/uniprot/Q55005 Q55005]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=ribonuclease}}
−
{{#set: nb pathway associated=0}}
+
{{#set: ec-number=ec-3.1.26.5}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb gene associated=12}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:01, 5 January 2021

Reaction 3.1.26.5-RXN

  • direction:
    • left-to-right
  • common-name:
    • ribonuclease
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1479, tRNA processing:
    • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN&oldid=62188"