Difference between revisions of "SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-11322 == * direction: ** left-to-right * common-name: ** pyridoxal 5'-phosphate synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.3...")
(Created page with "Category:reaction == Reaction SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** succinate semialdehyde dehydrogenase, nad+-depend...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11322 ==
+
== Reaction SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** pyridoxal 5'-phosphate synthase
+
** succinate semialdehyde dehydrogenase, nad+-dependent
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.3.3.6 ec-4.3.3.6]
+
** [http://enzyme.expasy.org/EC/1.2.1.24 ec-1.2.1.24]
−
* synonymous:
 
−
** pyridoxal 5'-phosphate synthase subunit pdxs
 
−
** glutamine amidotransferase subunit pdxt
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-15895]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[GLN]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c] '''+''' 1 [[Pi]][c] '''+''' 3 [[WATER]][c]
+
* 1 [[NAD]][c] '''+''' 1 [[SUCC-S-ALD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10267]]
+
* Gene: [[SJ05897]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19163]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6466]], pyridoxal 5'-phosphate biosynthesis II:
+
* [[GLUDEG-I-PWY]], GABA shunt:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6473]], 4-aminobutanoate degradation IV:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6535]], 4-aminobutanoate degradation I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-4321]], L-glutamate degradation IV:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR104540
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31508 31508]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13218 13218]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07456 R07456]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00713 R00713]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P51649 P51649]
 +
** [http://www.uniprot.org/uniprot/P51650 P51650]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=pyridoxal 5'-phosphate synthase}}
+
{{#set: common-name=succinate semialdehyde dehydrogenase, nad+-dependent}}
−
{{#set: ec-number=ec-4.3.3.6}}
+
{{#set: ec-number=ec-1.2.1.24}}
−
{{#set: synonymous=glutamine amidotransferase subunit pdxt|pyridoxal 5'-phosphate synthase subunit pdxs}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=4}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • succinate semialdehyde dehydrogenase, nad+-dependent
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUDEG-I-PWY, GABA shunt:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6473, 4-aminobutanoate degradation IV:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6535, 4-aminobutanoate degradation I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4321, L-glutamate degradation IV:
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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