Difference between revisions of "SUCL LPAREN gdp RPAREN m"

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(Created page with "Category:reaction == Reaction RXN-11356 == * direction: ** left-to-right * common-name: ** 9,9'-di-cis-ζ-carotene desaturase * synonymous: ** ζ-carotene desatura...")
(Created page with "Category:reaction == Reaction R-2-METHYLMALATE-DEHYDRATASE-RXN == * direction: ** reversible * common-name: ** (r)-2-methylmalate hydro-lyase (2-methylmaleate-forming) * e...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11356 ==
+
== Reaction R-2-METHYLMALATE-DEHYDRATASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 9,9'-di-cis-ζ-carotene desaturase
+
** (r)-2-methylmalate hydro-lyase (2-methylmaleate-forming)
−
* synonymous:
+
* ec-number:
−
** ζ-carotene desaturase
+
** [http://enzyme.expasy.org/EC/4.2.1.35 ec-4.2.1.35]
−
** zds
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-7526]][c] '''+''' 1 [[ETR-Quinones]][c] '''=>''' 1 [[CPD-7524]][c] '''+''' 1 [[ETR-Quinols]][c]
+
* 1 [[CPD-31]][c] '''<=>''' 1 [[2-METHYLMALEATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05680]]
+
* Gene: [[SJ09771]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ22396]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05681]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
+
* [[PWY-5101]], L-isoleucine biosynthesis II:
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7698]], 2,5-xylenol and 3,5-xylenol degradation:
 +
** '''1''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30960 30960]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22332 22332]
−
{{#set: direction=left-to-right}}
+
* LIGAND-RXN:
−
{{#set: common-name=9,9'-di-cis-&zeta;-carotene desaturase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03896 R03896]
−
{{#set: synonymous=zds|&zeta;-carotene desaturase}}
+
{{#set: direction=reversible}}
 +
{{#set: common-name=(r)-2-methylmalate hydro-lyase (2-methylmaleate-forming)}}
 +
{{#set: ec-number=ec-4.2.1.35}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:23, 15 January 2021

Reaction R-2-METHYLMALATE-DEHYDRATASE-RXN

  • direction:
    • reversible
  • common-name:
    • (r)-2-methylmalate hydro-lyase (2-methylmaleate-forming)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5101, L-isoleucine biosynthesis II:
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-7698, 2,5-xylenol and 3,5-xylenol degradation:
    • 1 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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