Difference between revisions of "SUMO-propeptides"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.39-RXN 1.1.1.39-RXN] == * direction: ** left-to-right * common-name: ** malate dehydrogenase...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.21.3.1-RXN 1.21.3.1-RXN] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.o...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.39-RXN 1.1.1.39-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.21.3.1-RXN 1.21.3.1-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** malate dehydrogenase (decarboxylating) (nad+)
 
−
** oxaloacetate decarboxylase
 
−
** malate dehydrogenase, nad-requiring
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
+
** [http://enzyme.expasy.org/EC/1.21.3.1 ec-1.21.3.1]
−
** [http://enzyme.expasy.org/EC/1.1.1.39 ec-1.1.1.39]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[N-5S-5-AMINO-5-CARBOXYPENTANOYL-L-CY]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[ISOPENICILLIN-N]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14191]]
+
* Gene: [[SJ08018]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11643]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
+
* [[PWY-5629]], isopenicillin N biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5629 PWY-5629]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7686]], L-malate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7686 PWY-7686]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-3641]], L-carnitine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3641 PWY-3641]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12654 12654]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22429 22429]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q48662 Q48662]
 
−
** [http://www.uniprot.org/uniprot/Q9PN12 Q9PN12]
 
−
** [http://www.uniprot.org/uniprot/O59029 O59029]
 
−
** [http://www.uniprot.org/uniprot/P16468 P16468]
 
−
** [http://www.uniprot.org/uniprot/Q9CGB2 Q9CGB2]
 
−
** [http://www.uniprot.org/uniprot/P26616 P26616]
 
−
** [http://www.uniprot.org/uniprot/Q9JVE6 Q9JVE6]
 
−
** [http://www.uniprot.org/uniprot/P37224 P37224]
 
−
** [http://www.uniprot.org/uniprot/P37225 P37225]
 
−
** [http://www.uniprot.org/uniprot/P37221 P37221]
 
−
** [http://www.uniprot.org/uniprot/Q7M1T9 Q7M1T9]
 
−
** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04872 R04872]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=oxaloacetate decarboxylase|malate dehydrogenase, nad-requiring|malate dehydrogenase (decarboxylating) (nad+)}}
+
{{#set: ec-number=ec-1.21.3.1}}
−
{{#set: ec-number=ec-1.1.1.38|ec-1.1.1.39}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=6}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:24, 26 August 2019

Reaction 1.21.3.1-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5629, isopenicillin N biosynthesis: PWY-5629
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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