Difference between revisions of "Saturated-2-Lysophosphatidates"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] == * direction: ** left-to-rig...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] == * direction: ** reversible * common-name: ** cis-aconitate...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** ferredoxin--nitrite reductase
+
** cis-aconitate hydratase
−
* ec-number:
+
** d-threo-isocitrate hydro-lyase (cis-aconitate-forming)
−
** [http://enzyme.expasy.org/EC/1.7.7.1 ec-1.7.7.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NITRITE]][c] '''+''' 8 [[PROTON]][c] '''+''' 6 [[Reduced-ferredoxins]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 6 [[Oxidized-ferredoxins]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00909]]
+
* Gene: [[SJ18471]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ22396]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
−
* [[PWY-381]], nitrate reduction II (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-381 PWY-381]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VIII (Helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18043 18043]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22147 22147]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00790 R00790]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=ferredoxin--nitrite reductase}}
+
{{#set: common-name=d-threo-isocitrate hydro-lyase (cis-aconitate-forming)|cis-aconitate hydratase}}
−
{{#set: ec-number=ec-1.7.7.1}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=15}}
−
{{#set: nb pathway associated=2}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:25, 26 August 2019

Reaction ACONITATEHYDR-RXN

  • direction:
    • reversible
  • common-name:
    • cis-aconitate hydratase
    • d-threo-isocitrate hydro-lyase (cis-aconitate-forming)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (Helicobacter): REDCITCYC
    • 5 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 19 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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