Semantic search

Jump to navigation Jump to search
 Common-nameEc-numberReconstruction categoryReconstruction sourceReconstruction commentNb gene associatedNb pathway associated
1.1.1.288-RXNEc-1.1.1.288ManualPrevious menecoReaction added with meneco (previous version)01
1.2.3.14-RXNEc-1.2.3.14ManualPrevious menecoReaction added with meneco (previous version)01
1.3.3.12-RXNEc-1.3.3.12ManualPrevious menecoReaction added with meneco (previous version)00
ACECOATRANS-RXN-CPD-14717/ACET//R-2-HYDROXYSTEARATE/ACETYL-COA.47.ManualPrevious menecoReaction added with meneco (previous version)00
Biomass rxnManualBiomass reactionForfba00
DIAMINOPIMELATE-DEHYDROGENASE-RXNEc-1.4.1.16ManualPrevious menecoReaction added with meneco (previous version)01
Exchange BIOMASSManualBiomass reactionExchange biomass to boundary00
ExchangeSeed-ADENOSYLCOBALAMINManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-AMMONIAManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-BIOTINManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CA+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CARBON-DIOXIDEManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CL-ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CO+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-COB-I-ALAMINManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CPD-3ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CPD-315ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CU+ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-CU+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-EDTAManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-FE+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-FE+3ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-K+ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-LightManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-MG+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-MN+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-NA+ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-NITRATEManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-OXYGEN-MOLECULEManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-PROTONManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-SULFATEManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-THIAMINEManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-WATERManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
ExchangeSeed-ZN+2ManualImport from mediumAdded to manage seeds from boundary to extracellular compartment00
MANNKIN-RXN-CPD-12601/ATP//MANNOSE-6P/ADP/PROTON.37.ManualPrevious menecoReaction added with meneco (previous version)00
MANNKIN-RXN-D-mannopyranose/ATP//MANNOSE-6P/ADP/PROTON.43.ManualPrevious menecoReaction added with meneco (previous version)00
RXN-11026-PALMITYL-COA/OXYGEN-MOLECULE//CPD0-2117/HYDROGEN-PEROXIDE.58.ManualPrevious menecoReaction added with meneco (previous version)00
RXN-11153L-galactono-1,4-lactone dehydrogenaseManualPrevious menecoReaction added with meneco (previous version)01
RXN-11876Ec-5.5.1.9ManualReactions add sjapCuration sterols (girard et al.)11
RXN-11878Ec-1.3.1.70ManualReactions add sjapCuration sterols (girard et al.)11
RXN-118814α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol demethylase
4α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol 14-demethylase
Ec-1.14.13.70Manual
Orthology
Annotation
Saccharina japonica genome
Output pantograph ectocarpus siliculosus
Reactions add sjap
N.a
Curation sterols (girard et al.)
10
RXN-11887Ec-1.14.19.20ManualReactions add sjapCuration sterols (girard et al.)12
RXN-13431Ec-2.3.1ManualPrevious menecoReaction added with meneco (previous version)01
RXN-137094-methylsterol monooxygenaseEc-1.14.18.9Manual
Gap-filling
Gapfilling solution with meneco draft medium
Reactions add sjap
Added for gapfilling
Curation sterols (girard et al.)
00
RXN-19200Ec-1.23.5ManualSjapTransformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)01
RXN-19202Ec-1.14.13ManualSjapTransformation of diadinoxanthin into diatoxanthin (second cycle of xanthophylls)11
RXN-21829Ec-1.14.18.10ManualReactions add sjapCuration sterols (girard et al.)00
RXN-21830Ec-1.1.1.418ManualReactions add sjapCuration sterols (girard et al.)01
RXN-21831Ec-1.1.1.270ManualReactions add sjapCuration sterols (girard et al.)01
RXN-21833ManualReaction creator sjapCuration sterols (girard et al.)01
RXN-21834ManualReaction creator sjapCuration sterols (girard et al.)01
RXN-21835ManualReaction creator sjapCuration sterols (girard et al.)01
RXN-21836ManualReaction creator sjapCuration sterols (girard et al.)01
RXN-21837ManualReaction creator sjapCuration sterols (girard et al.)01
RXN-22198ManualReactions creator sjapGallo202011
RXN-22199ManualReaction creator sjapGallo202001
RXN-22203ManualReaction creator sjapGallo202001
RXN-22204ManualReaction creator sjapGallo202001
RXN-22205ManualReaction creator sjapGallo202001
RXN-22206ManualReactions creator sjapGallo202011
RXN-4315-CPD-4207/WATER//CPD-10330/CPD-4209.35.ManualPrevious menecoReaction added with meneco (previous version)00
RXN-4315-CPD-4207/WATER//CPD0-1108/CPD-4209.35.ManualPrevious menecoReaction added with meneco (previous version)00
RXN-698Ec-1.13.11.51ManualPrevious menecoReaction added with meneco (previous version)01
RXN-7973-CPD-7424/OXYGEN-MOLECULE//CPD-7279/CPD-7280.44.ManualPrevious menecoReaction added with meneco (previous version)00
RXN-7978ManualSjapTransformation of zeaxanthin into antheraxanthin (first cycle of xanthophylls)11
RXN-7979ManualSjapTransformation of antheraxanthin into violaxanthin (first cycle of xanthophylls)12
RXN-8025ManualSjapTransformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)23
RXN-8026ManualSjapTransformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)23
RXN-8074Neoxanthin isomeraseEc-5.2.1ManualPrevious menecoReaction added with meneco (previous version)02
RXN11876ManualReaction creator sjapCuration sterols (girard et al.)11
RXN11878ManualReaction creator sjapCuration sterols (girard et al.)11
RXN11881ManualReaction creator sjapCuration sterols (girard et al.)11
RXN11884ManualReaction creator sjapCuration sterols (girard et al.)01
RXN1F-152Ec-1.14.15.qManualSjapTransformation of beta carotene into zeaxanthin (direct)20
RXN1F-155Ec-5.3.99.9ManualPrevious menecoReaction added with meneco (previous version)02
RXN21165ManualReaction creator sjapCuration sterols (girard et al.)11
RXN21166ManualReaction creator sjapCuration sterols (girard et al.)11
RXN21167ManualReaction creator sjapCuration sterols (girard et al.)11
RXN66-3184α-carboxy-5α-cholesta-8,24-dien-3β-ol:nad(p)+ 3-dehydrogenase (decarboxylating)Ec-1.1.1.170Manual
Annotation
Saccharina japonica genome
Reactions add sjap
N.a
Curation sterols (girard et al.)
13
RXN66-3193-keto sterol reductase
Zymosterol 3-dehydrogenase
Ec-1.1.1.270Manual
Annotation
Saccharina japonica genome
Reactions add sjap
N.a
Curation sterols (girard et al.)
13
RXN66-320Ec-5.3.3.5Manual
Gap-filling
Gapfilling solution with meneco draft medium
Reactions add sjap
Added for gapfilling
Curation sterols (girard et al.)
02
Transport BIOMASSManualBiomass reactionTransport biomass to external compartment00
TransportSeed-ADENOSYLCOBALAMINManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-AMMONIAManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-BIOTINManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-CA+2ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-CARBON-DIOXIDEManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-CL-ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-CO+2ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-COB-I-ALAMINManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-CPD-3ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-CPD-315ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-CU+ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-CU+2ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-EDTAManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-FE+2ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-FE+3ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-K+ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-LightManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-MG+2ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-MN+2ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-NA+ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-NITRATEManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-OXYGEN-MOLECULEManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-PROTONManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-SULFATEManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-THIAMINEManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-WATERManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00
TransportSeed-ZN+2ManualImport from mediumAdded to manage seeds from extracellular to cytosol compartment00