Difference between revisions of "Sterol-3-beta-D-glucosides"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] == * direction: ** reversibl...")
(Created page with "Category:gene == Gene SJ04229 == * transcription-direction: ** positive * right-end-position: ** 194660 * left-end-position: ** 187785 * centisome-position: ** 36.380455...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] ==
+
== Gene SJ04229 ==
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* direction:
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* transcription-direction:
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** reversible
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** positive
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* common-name:
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* right-end-position:
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** valine transaminase
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** 194660
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* ec-number:
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* left-end-position:
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** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
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** 187785
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== Reaction formula ==
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* centisome-position:
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[VAL]][c] '''<=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[GLT]][c]
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** 36.380455   
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
−
* Gene: [[SJ17677]]
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* [[S.japonica_carotenoid_curated]]
 +
== Reaction(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[3-OXOACYL-ACP-REDUCT-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[DHBDEHYD-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[GLUCONATE-5-DEHYDROGENASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RIBITOL-2-DEHYDROGENASE-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10060]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10655]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10659]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11476]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11480]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13008]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16616]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16622]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16626]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16630]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9514]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9518]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9524]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* Gene: [[SJ06412]]
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* [[RXN-9528]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* Gene: [[SJ04586]]
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* [[RXN-9532]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9536]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
== Pathway(s) ==
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* [[RXN-9540]]
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* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
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** Category: [[annotation]]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[VALSYN-PWY]], L-valine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=VALSYN-PWY VALSYN-PWY]
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* [[RXN-9552]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9556]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9633]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-2142]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-157]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN1G-349]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN1G-469]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-508]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[FASYN-ELONG-PWY]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5901]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[IDNCAT-PWY]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[RIBITOLUTIL-PWY]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6113]]
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** '''8''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWYG-321]]
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** '''26''' reactions found over '''182''' reactions in the full pathway
 +
* [[PWY-6282]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6519]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7664]]
 +
** '''13''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7663]]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=ALANINE-VALINESYN-PWY ALANINE-VALINESYN-PWY]
+
* [[PWY-5971]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5057]], L-valine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5057 PWY-5057]
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* [[PWY-7388]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** '''7''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
+
* [[PWY-5994]]
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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** '''31''' reactions found over '''31''' reactions in the full pathway
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-5367]]
−
== External links  ==
+
** '''2''' reactions found over '''6''' reactions in the full pathway
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* RHEA:
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* [[PWY-5973]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24816 24816]
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** '''4''' reactions found over '''5''' reactions in the full pathway
−
* LIGAND-RXN:
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* [[PWY-5989]]
−
** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* UNIPROT:
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* [[PWY3O-355]]
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
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** '''6''' reactions found over '''6''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P38891 P38891]
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* [[PWY0-862]]
−
** [http://www.uniprot.org/uniprot/P47176 P47176]
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** '''5''' reactions found over '''6''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/O86505 O86505]
+
* [[PWY-7858]]
−
** [http://www.uniprot.org/uniprot/O14370 O14370]
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** '''4''' reactions found over '''6''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/O32954 O32954]
+
</div>
−
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
+
{{#set: transcription-direction=positive}}
−
{{#set: direction=reversible}}
+
{{#set: right-end-position=194660}}
−
{{#set: common-name=valine transaminase}}
+
{{#set: left-end-position=187785}}
−
{{#set: ec-number=ec-2.6.1.42}}
+
{{#set: centisome-position=36.380455    }}
−
{{#set: nb gene associated=3}}
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb reaction associated=29}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: nb pathway associated=19}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 09:28, 27 August 2019

Gene SJ04229

  • transcription-direction:
    • positive
  • right-end-position:
    • 194660
  • left-end-position:
    • 187785
  • centisome-position:
    • 36.380455

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FASYN-ELONG-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5901
    • 2 reactions found over 3 reactions in the full pathway
  • IDNCAT-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • RIBITOLUTIL-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6113
    • 8 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 26 reactions found over 182 reactions in the full pathway
  • PWY-6282
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7664
    • 13 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-7388
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5994
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5973
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5989
    • 6 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7858
    • 4 reactions found over 6 reactions in the full pathway




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