Difference between revisions of "TCM3"

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(Created page with "Category:reaction == Reaction RXN0-884 == * direction: ** left-to-right * common-name: ** dimethylallyl-diphosphate:nad(p)+ oxidoreductase * ec-number: ** [http://enzyme.e...")
(Created page with "Category:reaction == Reaction TCM3 == * direction: ** reversible == Reaction formula == * 1.0 PPI[C_c] '''<=>''' 1.0 PPI[C_m] == Gene(s) associated with this react...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN0-884 ==
+
== Reaction TCM3 ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* common-name:
 
** dimethylallyl-diphosphate:nad(p)+ oxidoreductase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/1.17.7.4 ec-1.17.7.4]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD-4211]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
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* 1.0 [[PPI]][C_c] '''<=>''' 1.0 [[PPI]][C_m]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ04795]]
+
* Gene: [[SJ21571]]
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-7560]], methylerythritol phosphate pathway II:
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: direction=reversible}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24827 24827]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=dimethylallyl-diphosphate:nad(p)+ oxidoreductase}}
 
{{#set: ec-number=ec-1.17.7.4}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:22, 18 March 2021

Reaction TCM3

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links