Difference between revisions of "TCV3"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GMP-SYN-GLUT-RXN GMP-SYN-GLUT-RXN] == * direction: ** left-to-right * common-name: ** xanthosine-5'...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.4.4-RXN 1.2.4.4-RXN] == * direction: ** reversible * common-name: ** 3-methyl-2-oxobutanoate de...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GMP-SYN-GLUT-RXN GMP-SYN-GLUT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.4.4-RXN 1.2.4.4-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** xanthosine-5'-phosphate:l-glutamine amido-ligase (amp-forming)
+
** 3-methyl-2-oxobutanoate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.5.2 ec-6.3.5.2]
+
** [http://enzyme.expasy.org/EC/1.2.4.4 ec-1.2.4.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[XANTHOSINE-5-PHOSPHATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[GMP]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MP-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08788]]
+
* Gene: [[SJ18449]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ22386]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11017]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
+
* [[PWY-5046]], 2-oxoisovalerate decarboxylation to isobutanoyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5046 PWY-5046]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
Line 29: Line 29:
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11681 11681]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13460 13460]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01231 R01231]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01701 R01701]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P32073 P32073]
+
** [http://www.uniprot.org/uniprot/P21839 P21839]
−
** [http://www.uniprot.org/uniprot/P49915 P49915]
+
** [http://www.uniprot.org/uniprot/P21953 P21953]
−
** [http://www.uniprot.org/uniprot/O25165 O25165]
+
** [http://www.uniprot.org/uniprot/P37940 P37940]
−
** [http://www.uniprot.org/uniprot/Q58531 Q58531]
+
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
−
** [http://www.uniprot.org/uniprot/Q9PN49 Q9PN49]
+
** [http://www.uniprot.org/uniprot/P37941 P37941]
−
** [http://www.uniprot.org/uniprot/P29727 P29727]
+
** [http://www.uniprot.org/uniprot/P11178 P11178]
−
** [http://www.uniprot.org/uniprot/O66601 O66601]
+
** [http://www.uniprot.org/uniprot/P12694 P12694]
−
** [http://www.uniprot.org/uniprot/P49056 P49056]
+
** [http://www.uniprot.org/uniprot/P09061 P09061]
−
** [http://www.uniprot.org/uniprot/Q9CFJ0 Q9CFJ0]
+
** [http://www.uniprot.org/uniprot/P09060 P09060]
−
** [http://www.uniprot.org/uniprot/Q9JW60 Q9JW60]
+
** [http://www.uniprot.org/uniprot/P11960 P11960]
−
** [http://www.uniprot.org/uniprot/P44335 P44335]
+
** [http://www.uniprot.org/uniprot/O84344 O84344]
−
** [http://www.uniprot.org/uniprot/P38625 P38625]
+
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
−
** [http://www.uniprot.org/uniprot/P49057 P49057]
+
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
−
** [http://www.uniprot.org/uniprot/P04079 P04079]
+
** [http://www.uniprot.org/uniprot/P35738 P35738]
−
** [http://www.uniprot.org/uniprot/Q7VLE9 Q7VLE9]
+
** [http://www.uniprot.org/uniprot/P50136 P50136]
 +
** [http://www.uniprot.org/uniprot/O48615 O48615]
 +
** [http://www.uniprot.org/uniprot/O03849 O03849]
 +
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
 +
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
 +
** [http://www.uniprot.org/uniprot/O82450 O82450]
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=xanthosine-5'-phosphate:l-glutamine amido-ligase (amp-forming)}}
+
{{#set: common-name=3-methyl-2-oxobutanoate dehydrogenase}}
−
{{#set: ec-number=ec-6.3.5.2}}
+
{{#set: ec-number=ec-1.2.4.4}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:31, 27 August 2019

Reaction 1.2.4.4-RXN

  • direction:
    • reversible
  • common-name:
    • 3-methyl-2-oxobutanoate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5046, 2-oxoisovalerate decarboxylation to isobutanoyl-CoA: PWY-5046
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=TCV3&oldid=37030"