Difference between revisions of "THIAZOLSYN2-RXN"

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(Created page with "Category:reaction == Reaction RXN-8991 == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydratase ** (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylm...")
(Created page with "Category:reaction == Reaction DIAMINOPIMEPIM-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7] == Reaction formula == * 1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8991 ==
+
== Reaction DIAMINOPIMEPIM-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* common-name:
+
* ec-number:
−
** 3-isopropylmalate dehydratase
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** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7]
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** (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
 
−
* synonymous:
 
−
** α-isopropylmalate isomerase
 
−
** 3-isopropylmalate hydro-lyase
 
−
** (2r,3s)-3-isopropylmalate hydro-lyase
 
−
** β-isopropylmalate dehydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[MESO-DIAMINOPIMELATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22396]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09771]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
+
* [[PWY-5097]], L-lysine biosynthesis VI:
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[LEUSYN-PWY]], L-leucine biosynthesis:
+
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2941]], L-lysine biosynthesis II:
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15396 15396]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02735 R02735]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9PMD8 Q9PMD8]
 +
** [http://www.uniprot.org/uniprot/Q9JV69 Q9JV69]
 +
** [http://www.uniprot.org/uniprot/P44859 P44859]
 +
** [http://www.uniprot.org/uniprot/Q58519 Q58519]
 +
** [http://www.uniprot.org/uniprot/P0A6K1 P0A6K1]
 +
** [http://www.uniprot.org/uniprot/Q51564 Q51564]
 +
** [http://www.uniprot.org/uniprot/P46814 P46814]
 +
** [http://www.uniprot.org/uniprot/O05322 O05322]
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=(2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)|3-isopropylmalate dehydratase}}
+
{{#set: ec-number=ec-5.1.1.7}}
−
{{#set: synonymous=&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase|(2r,3s)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=3}}
−
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 19:04, 14 January 2021

Reaction DIAMINOPIMEPIM-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5097, L-lysine biosynthesis VI:
    • 7 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I:
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-2941, L-lysine biosynthesis II:
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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