Difference between revisions of "THIOREDOXIN-REDUCT-NADPH-RXN"

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(Created page with "Category:reaction == Reaction RIBONUCLEOSIDE-DIP-REDUCTI-RXN == * direction: ** left-to-right * common-name: ** ribonucleoside-diphosphate reductase ** ribonucleoside-diph...")
(Created page with "Category:reaction == Reaction THIOREDOXIN-REDUCT-NADPH-RXN == * direction: ** left-to-right * common-name: ** thioredoxin-disulfide reductase ** thioredoxin reductase * ec...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RIBONUCLEOSIDE-DIP-REDUCTI-RXN ==
+
== Reaction THIOREDOXIN-REDUCT-NADPH-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** ribonucleoside-diphosphate reductase
+
** thioredoxin-disulfide reductase
−
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
+
** thioredoxin reductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.17.4.1 ec-1.17.4.1]
+
** [http://enzyme.expasy.org/EC/1.8.1.9 ec-1.8.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Red-Thioredoxin]][c] '''+''' 1 [[Ribonucleoside-Diphosphates]][c] '''=>''' 1 [[Deoxy-Ribonucleoside-Diphosphates]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[NADPH]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Red-Thioredoxin]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ18284]]
+
* Gene: [[SJ00760]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04991]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21120]]
+
* Gene: [[SJ00931]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16658]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16329]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03698]]
+
* Gene: [[SJ06874]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01778]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ20794]]
+
* Gene: [[SJ09093]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ12278]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17066]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ14458]]
+
* Gene: [[SJ21339]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ03697]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21344]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ21121]]
+
* Gene: [[SJ00293]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16809]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08960]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[THIOREDOX-PWY]], thioredoxin pathway:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR104766
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23254 23254]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20345 20345]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04294 R04294]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02016 R02016]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P89462 P89462]
+
** [http://www.uniprot.org/uniprot/Q05741 Q05741]
−
** [http://www.uniprot.org/uniprot/Q7M0K8 Q7M0K8]
+
** [http://www.uniprot.org/uniprot/P56431 P56431]
−
** [http://www.uniprot.org/uniprot/Q91YM8 Q91YM8]
+
** [http://www.uniprot.org/uniprot/O28718 O28718]
−
** [http://www.uniprot.org/uniprot/P09938 P09938]
+
** [http://www.uniprot.org/uniprot/P80880 P80880]
−
** [http://www.uniprot.org/uniprot/Q8IL94 Q8IL94]
+
** [http://www.uniprot.org/uniprot/P43496 P43496]
−
** [http://www.uniprot.org/uniprot/P32984 P32984]
+
** [http://www.uniprot.org/uniprot/P94284 P94284]
−
** [http://www.uniprot.org/uniprot/P50647 P50647]
+
** [http://www.uniprot.org/uniprot/O66790 O66790]
−
** [http://www.uniprot.org/uniprot/P50650 P50650]
+
** [http://www.uniprot.org/uniprot/Q9PIY1 Q9PIY1]
−
** [http://www.uniprot.org/uniprot/P50620 P50620]
+
** [http://www.uniprot.org/uniprot/P47348 P47348]
−
** [http://www.uniprot.org/uniprot/O83972 O83972]
+
** [http://www.uniprot.org/uniprot/Q9CH02 Q9CH02]
−
** [http://www.uniprot.org/uniprot/P43755 P43755]
+
** [http://www.uniprot.org/uniprot/Q7M0Y2 Q7M0Y2]
−
** [http://www.uniprot.org/uniprot/Q9PJ87 Q9PJ87]
+
** [http://www.uniprot.org/uniprot/O26804 O26804]
−
** [http://www.uniprot.org/uniprot/P39452 P39452]
+
** [http://www.uniprot.org/uniprot/Q9JU23 Q9JU23]
−
** [http://www.uniprot.org/uniprot/O66503 O66503]
+
** [http://www.uniprot.org/uniprot/P43788 P43788]
−
** [http://www.uniprot.org/uniprot/Q9JU45 Q9JU45]
+
** [http://www.uniprot.org/uniprot/Q58931 Q58931]
−
** [http://www.uniprot.org/uniprot/P47473 P47473]
+
** [http://www.uniprot.org/uniprot/Q9CF34 Q9CF34]
−
** [http://www.uniprot.org/uniprot/P37146 P37146]
+
** [http://www.uniprot.org/uniprot/P0A9P4 P0A9P4]
−
** [http://www.uniprot.org/uniprot/O26748 O26748]
+
** [http://www.uniprot.org/uniprot/P23160 P23160]
−
** [http://www.uniprot.org/uniprot/O28609 O28609]
+
** [http://www.uniprot.org/uniprot/P39916 P39916]
−
** [http://www.uniprot.org/uniprot/Q9PIR3 Q9PIR3]
+
** [http://www.uniprot.org/uniprot/Q39242 Q39242]
−
** [http://www.uniprot.org/uniprot/Q9JU43 Q9JU43]
+
** [http://www.uniprot.org/uniprot/Q39243 Q39243]
−
** [http://www.uniprot.org/uniprot/P55982 P55982]
+
** [http://www.uniprot.org/uniprot/P38816 P38816]
−
** [http://www.uniprot.org/uniprot/P03190 P03190]
+
** [http://www.uniprot.org/uniprot/Q25861 Q25861]
−
** [http://www.uniprot.org/uniprot/P00452 P00452]
+
** [http://www.uniprot.org/uniprot/P29509 P29509]
−
** [http://www.uniprot.org/uniprot/P69924 P69924]
+
** [http://www.uniprot.org/uniprot/P52213 P52213]
−
** [http://www.uniprot.org/uniprot/P07201 P07201]
+
** [http://www.uniprot.org/uniprot/Q16881 Q16881]
−
** [http://www.uniprot.org/uniprot/P26713 P26713]
+
** [http://www.uniprot.org/uniprot/P75531 P75531]
−
** [http://www.uniprot.org/uniprot/P11158 P11158]
+
** [http://www.uniprot.org/uniprot/P74746 P74746]
−
** [http://www.uniprot.org/uniprot/P11157 P11157]
+
** [http://www.uniprot.org/uniprot/P46843 P46843]
−
** [http://www.uniprot.org/uniprot/P23921 P23921]
+
** [http://www.uniprot.org/uniprot/O54535 O54535]
−
** [http://www.uniprot.org/uniprot/P31350 P31350]
+
** [http://www.uniprot.org/uniprot/Q39951 Q39951]
−
** [http://www.uniprot.org/uniprot/Q60561 Q60561]
+
** [http://www.uniprot.org/uniprot/Q92375 Q92375]
−
** [http://www.uniprot.org/uniprot/Q03604 Q03604]
+
** [http://www.uniprot.org/uniprot/P52215 P52215]
−
** [http://www.uniprot.org/uniprot/P37426 P37426]
+
** [http://www.uniprot.org/uniprot/P51978 P51978]
−
** [http://www.uniprot.org/uniprot/P17424 P17424]
 
−
** [http://www.uniprot.org/uniprot/P36602 P36602]
 
−
** [http://www.uniprot.org/uniprot/P36603 P36603]
 
−
** [http://www.uniprot.org/uniprot/P50643 P50643]
 
−
** [http://www.uniprot.org/uniprot/P50645 P50645]
 
−
** [http://www.uniprot.org/uniprot/Q66662 Q66662]
 
−
** [http://www.uniprot.org/uniprot/Q66663 Q66663]
 
−
** [http://www.uniprot.org/uniprot/P49723 P49723]
 
−
** [http://www.uniprot.org/uniprot/P50651 P50651]
 
−
** [http://www.uniprot.org/uniprot/P78027 P78027]
 
−
** [http://www.uniprot.org/uniprot/P74240 P74240]
 
−
** [http://www.uniprot.org/uniprot/O36410 O36410]
 
−
** [http://www.uniprot.org/uniprot/O36411 O36411]
 
−
** [http://www.uniprot.org/uniprot/P49730 P49730]
 
−
** [http://www.uniprot.org/uniprot/Q89941 Q89941]
 
−
** [http://www.uniprot.org/uniprot/Q98526 Q98526]
 
−
** [http://www.uniprot.org/uniprot/O41111 O41111]
 
−
** [http://www.uniprot.org/uniprot/Q9YMK7 Q9YMK7]
 
−
** [http://www.uniprot.org/uniprot/Q9YMI1 Q9YMI1]
 
−
** [http://www.uniprot.org/uniprot/Q9YMI0 Q9YMI0]
 
−
** [http://www.uniprot.org/uniprot/O57175 O57175]
 
−
** [http://www.uniprot.org/uniprot/O39262 O39262]
 
−
** [http://www.uniprot.org/uniprot/O39263 O39263]
 
−
** [http://www.uniprot.org/uniprot/Q9YTK7 Q9YTK7]
 
−
** [http://www.uniprot.org/uniprot/Q9YTK6 Q9YTK6]
 
−
** [http://www.uniprot.org/uniprot/Q9UW15 Q9UW15]
 
−
** [http://www.uniprot.org/uniprot/Q9SJ20 Q9SJ20]
 
−
** [http://www.uniprot.org/uniprot/P03175 P03175]
 
−
** [http://www.uniprot.org/uniprot/P09247 P09247]
 
−
** [http://www.uniprot.org/uniprot/P09248 P09248]
 
−
** [http://www.uniprot.org/uniprot/P28847 P28847]
 
−
** [http://www.uniprot.org/uniprot/P28846 P28846]
 
−
** [http://www.uniprot.org/uniprot/P69520 P69520]
 
−
** [http://www.uniprot.org/uniprot/Q01319 Q01319]
 
−
** [http://www.uniprot.org/uniprot/P10224 P10224]
 
−
** [http://www.uniprot.org/uniprot/P16782 P16782]
 
−
** [http://www.uniprot.org/uniprot/P20503 P20503]
 
−
** [http://www.uniprot.org/uniprot/P26685 P26685]
 
−
** [http://www.uniprot.org/uniprot/P12848 P12848]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor|ribonucleoside-diphosphate reductase}}
+
{{#set: common-name=thioredoxin reductase|thioredoxin-disulfide reductase}}
−
{{#set: ec-number=ec-1.17.4.1}}
+
{{#set: ec-number=ec-1.8.1.9}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb gene associated=13}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction THIOREDOXIN-REDUCT-NADPH-RXN

  • direction:
    • left-to-right
  • common-name:
    • thioredoxin-disulfide reductase
    • thioredoxin reductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • THIOREDOX-PWY, thioredoxin pathway:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=THIOREDOXIN-REDUCT-NADPH-RXN&oldid=142985"