Difference between revisions of "THREDEHYD-RXN"

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(Created page with "Category:reaction == Reaction HYDROG-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.12.7.2 ec-1.12.7.2] == Reaction formula == * 1 HYDR...")
(Created page with "Category:reaction == Reaction THREDEHYD-RXN == * direction: ** left-to-right * common-name: ** l-threonine deaminase * ec-number: ** [http://enzyme.expasy.org/EC/4.3.1.19...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HYDROG-RXN ==
+
== Reaction THREDEHYD-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** l-threonine deaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.12.7.2 ec-1.12.7.2]
+
** [http://enzyme.expasy.org/EC/4.3.1.19 ec-4.3.1.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HYDROGEN-MOLECULE]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''<=>''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c]
+
* 1 [[THR]][c] '''=>''' 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[AMMONIUM]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19006]]
+
* Gene: [[SJ10955]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ04494]]
+
* Gene: [[SJ08066]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ18864]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6785]], hydrogen production VIII:
+
* [[PWY66-428]], L-threonine degradation V:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6780]], hydrogen production VI:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6759]], hydrogen production III:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[GLUDEG-II-PWY]], L-glutamate degradation VII (to butanoate):
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR104714
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17448 17448]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22109 22109]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00019 R00019]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00996 R00996]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P27648 P27648]
+
** [http://www.uniprot.org/uniprot/P25306 P25306]
−
** [http://www.uniprot.org/uniprot/P31892 P31892]
+
** [http://www.uniprot.org/uniprot/Q04513 Q04513]
−
** [http://www.uniprot.org/uniprot/O25350 O25350]
+
** [http://www.uniprot.org/uniprot/P37946 P37946]
−
** [http://www.uniprot.org/uniprot/O67092 O67092]
+
** [http://www.uniprot.org/uniprot/Q9JZW1 Q9JZW1]
−
** [http://www.uniprot.org/uniprot/P31891 P31891]
+
** [http://www.uniprot.org/uniprot/Q02145 Q02145]
−
** [http://www.uniprot.org/uniprot/P0AAJ8 P0AAJ8]
+
** [http://www.uniprot.org/uniprot/P66897 P66897]
−
** [http://www.uniprot.org/uniprot/O66894 O66894]
+
** [http://www.uniprot.org/uniprot/Q9WYJ1 Q9WYJ1]
−
** [http://www.uniprot.org/uniprot/P0AAM1 P0AAM1]
+
** [http://www.uniprot.org/uniprot/Q9PP95 Q9PP95]
−
** [http://www.uniprot.org/uniprot/P31898 P31898]
+
** [http://www.uniprot.org/uniprot/P25379 P25379]
−
** [http://www.uniprot.org/uniprot/P0ACE0 P0ACE0]
+
** [http://www.uniprot.org/uniprot/P00927 P00927]
−
** [http://www.uniprot.org/uniprot/O28891 O28891]
+
** [http://www.uniprot.org/uniprot/P20506 P20506]
−
** [http://www.uniprot.org/uniprot/O66895 O66895]
+
** [http://www.uniprot.org/uniprot/P0AGF6 P0AGF6]
−
** [http://www.uniprot.org/uniprot/Q9ZLK4 Q9ZLK4]
+
** [http://www.uniprot.org/uniprot/P04968 P04968]
−
** [http://www.uniprot.org/uniprot/Q9WY44 Q9WY44]
+
** [http://www.uniprot.org/uniprot/P20132 P20132]
−
** [http://www.uniprot.org/uniprot/Q46508 Q46508]
+
** [http://www.uniprot.org/uniprot/P09367 P09367]
−
** [http://www.uniprot.org/uniprot/O66896 O66896]
+
** [http://www.uniprot.org/uniprot/Q9RWU8 Q9RWU8]
−
** [http://www.uniprot.org/uniprot/O67095 O67095]
+
** [http://www.uniprot.org/uniprot/Q9JUX5 Q9JUX5]
−
** [http://www.uniprot.org/uniprot/Q9PN32 Q9PN32]
+
** [http://www.uniprot.org/uniprot/Q9ZD93 Q9ZD93]
−
** [http://www.uniprot.org/uniprot/P13061 P13061]
+
** [http://www.uniprot.org/uniprot/P31212 P31212]
−
** [http://www.uniprot.org/uniprot/Q9UYN3 Q9UYN3]
+
** [http://www.uniprot.org/uniprot/P36007 P36007]
−
** [http://www.uniprot.org/uniprot/P16429 P16429]
+
** [http://www.uniprot.org/uniprot/P73375 P73375]
−
** [http://www.uniprot.org/uniprot/O52683 O52683]
+
** [http://www.uniprot.org/uniprot/Q9T0D1 Q9T0D1]
−
** [http://www.uniprot.org/uniprot/P13066 P13066]
+
** [http://www.uniprot.org/uniprot/Q39469 Q39469]
−
** [http://www.uniprot.org/uniprot/O25349 O25349]
+
** [http://www.uniprot.org/uniprot/Q93968 Q93968]
−
** [http://www.uniprot.org/uniprot/P0AAK1 P0AAK1]
+
** [http://www.uniprot.org/uniprot/Q9XAA4 Q9XAA4]
−
** [http://www.uniprot.org/uniprot/P29166 P29166]
+
** [http://www.uniprot.org/uniprot/O94634 O94634]
−
** [http://www.uniprot.org/uniprot/P07603 P07603]
+
** [http://www.uniprot.org/uniprot/O59791 O59791]
−
** [http://www.uniprot.org/uniprot/P13628 P13628]
 
−
** [http://www.uniprot.org/uniprot/P0ACD8 P0ACD8]
 
−
** [http://www.uniprot.org/uniprot/P69739 P69739]
 
−
** [http://www.uniprot.org/uniprot/P12636 P12636]
 
−
** [http://www.uniprot.org/uniprot/P12635 P12635]
 
−
** [http://www.uniprot.org/uniprot/Q59262 Q59262]
 
−
** [http://www.uniprot.org/uniprot/P33375 P33375]
 
−
** [http://www.uniprot.org/uniprot/P33374 P33374]
 
−
** [http://www.uniprot.org/uniprot/P21950 P21950]
 
−
** [http://www.uniprot.org/uniprot/P21949 P21949]
 
−
** [http://www.uniprot.org/uniprot/P23000 P23000]
 
−
** [http://www.uniprot.org/uniprot/Q7M121 Q7M121]
 
−
** [http://www.uniprot.org/uniprot/P15283 P15283]
 
−
** [http://www.uniprot.org/uniprot/P15284 P15284]
 
−
** [http://www.uniprot.org/uniprot/P16430 P16430]
 
−
** [http://www.uniprot.org/uniprot/P16431 P16431]
 
−
** [http://www.uniprot.org/uniprot/P16432 P16432]
 
−
** [http://www.uniprot.org/uniprot/P16433 P16433]
 
−
** [http://www.uniprot.org/uniprot/P17633 P17633]
 
−
** [http://www.uniprot.org/uniprot/P17632 P17632]
 
−
** [http://www.uniprot.org/uniprot/P18191 P18191]
 
−
** [http://www.uniprot.org/uniprot/P18637 P18637]
 
−
** [http://www.uniprot.org/uniprot/P18636 P18636]
 
−
** [http://www.uniprot.org/uniprot/Q46606 Q46606]
 
−
** [http://www.uniprot.org/uniprot/P31875 P31875]
 
−
** [http://www.uniprot.org/uniprot/Q7M0Y1 Q7M0Y1]
 
−
** [http://www.uniprot.org/uniprot/Q7M0Y0 Q7M0Y0]
 
−
** [http://www.uniprot.org/uniprot/Q9S8S0 Q9S8S0]
 
−
** [http://www.uniprot.org/uniprot/P31883 P31883]
 
−
** [http://www.uniprot.org/uniprot/P21960 P21960]
 
−
** [http://www.uniprot.org/uniprot/Q43953 Q43953]
 
−
** [http://www.uniprot.org/uniprot/O96948 O96948]
 
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.12.7.2}}
+
{{#set: common-name=l-threonine deaminase}}
−
{{#set: nb gene associated=3}}
+
{{#set: ec-number=ec-4.3.1.19}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction THREDEHYD-RXN

  • direction:
    • left-to-right
  • common-name:
    • l-threonine deaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-428, L-threonine degradation V:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=THREDEHYD-RXN&oldid=141092"