Difference between revisions of "THREDEHYD-RXN"
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(Created page with "Category:reaction == Reaction CREATININASE-RXN == * direction: ** reversible * common-name: ** creatininase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.2.10 ec-3.5.2....") |
(Created page with "Category:reaction == Reaction THREDEHYD-RXN == * direction: ** left-to-right * common-name: ** l-threonine deaminase * ec-number: ** [http://enzyme.expasy.org/EC/4.3.1.19...") |
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(One intermediate revision by one other user not shown) | |||
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction THREDEHYD-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** l-threonine deaminase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/3. | + | ** [http://enzyme.expasy.org/EC/4.3.1.19 ec-4.3.1.19] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[THR]][c] '''=>''' 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[AMMONIUM]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ10955]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ08066]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY66-428]], L-threonine degradation V: |
− | ** '''2''' reactions found over ''' | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR104714 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22109 22109] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00996 R00996] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P25306 P25306] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q04513 Q04513] |
− | {{#set: direction= | + | ** [http://www.uniprot.org/uniprot/P37946 P37946] |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/Q9JZW1 Q9JZW1] |
− | {{#set: ec-number=ec-3. | + | ** [http://www.uniprot.org/uniprot/Q02145 Q02145] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P66897 P66897] |
+ | ** [http://www.uniprot.org/uniprot/Q9WYJ1 Q9WYJ1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PP95 Q9PP95] | ||
+ | ** [http://www.uniprot.org/uniprot/P25379 P25379] | ||
+ | ** [http://www.uniprot.org/uniprot/P00927 P00927] | ||
+ | ** [http://www.uniprot.org/uniprot/P20506 P20506] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AGF6 P0AGF6] | ||
+ | ** [http://www.uniprot.org/uniprot/P04968 P04968] | ||
+ | ** [http://www.uniprot.org/uniprot/P20132 P20132] | ||
+ | ** [http://www.uniprot.org/uniprot/P09367 P09367] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RWU8 Q9RWU8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUX5 Q9JUX5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZD93 Q9ZD93] | ||
+ | ** [http://www.uniprot.org/uniprot/P31212 P31212] | ||
+ | ** [http://www.uniprot.org/uniprot/P36007 P36007] | ||
+ | ** [http://www.uniprot.org/uniprot/P73375 P73375] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9T0D1 Q9T0D1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39469 Q39469] | ||
+ | ** [http://www.uniprot.org/uniprot/Q93968 Q93968] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9XAA4 Q9XAA4] | ||
+ | ** [http://www.uniprot.org/uniprot/O94634 O94634] | ||
+ | ** [http://www.uniprot.org/uniprot/O59791 O59791] | ||
+ | </div> | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=l-threonine deaminase}} | ||
+ | {{#set: ec-number=ec-4.3.1.19}} | ||
+ | {{#set: nb gene associated=2}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:20, 18 March 2021
Contents
Reaction THREDEHYD-RXN
- direction:
- left-to-right
- common-name:
- l-threonine deaminase
- ec-number:
Reaction formula
- 1 THR[c] => 1 2-OXOBUTANOATE[c] + 1 AMMONIUM[c]
Gene(s) associated with this reaction
- Gene: SJ10955
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ08066
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY66-428, L-threonine degradation V:
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links