Difference between revisions of "THREONINE--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-9527 == * direction: ** left-to-right * common-name: ** 3-oxo-decanoyl-[acyl-carrier protein] synthase ** 3-oxoacyl-[acyl-carrier-protein...")
(Created page with "Category:reaction == Reaction THREONINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** threonine-trna ligase * ec-number: ** [http://enzyme.expasy.org...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9527 ==
+
== Reaction THREONINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxo-decanoyl-[acyl-carrier protein] synthase
+
** threonine-trna ligase
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/6.1.1.3 ec-6.1.1.3]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[THR]][c] '''+''' 1 [[THR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-THR-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ03199]]
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ15984]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00005]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10624]]
+
* Gene: [[SJ20100]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ15983]]
+
* Gene: [[SJ17482]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04443]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR123912
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24625 24625]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04960 R04960]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03663 R03663]
−
* METANETX-RXN : MNXR109251
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O83809 O83809]
 +
** [http://www.uniprot.org/uniprot/Q9JVA3 Q9JVA3]
 +
** [http://www.uniprot.org/uniprot/P56071 P56071]
 +
** [http://www.uniprot.org/uniprot/O58430 O58430]
 +
** [http://www.uniprot.org/uniprot/P47615 P47615]
 +
** [http://www.uniprot.org/uniprot/O05947 O05947]
 +
** [http://www.uniprot.org/uniprot/Q9PIS3 Q9PIS3]
 +
** [http://www.uniprot.org/uniprot/O67583 O67583]
 +
** [http://www.uniprot.org/uniprot/O27504 O27504]
 +
** [http://www.uniprot.org/uniprot/O51662 O51662]
 +
** [http://www.uniprot.org/uniprot/Q9ZMV3 Q9ZMV3]
 +
** [http://www.uniprot.org/uniprot/Q9Z7A0 Q9Z7A0]
 +
** [http://www.uniprot.org/uniprot/Q9WZJ9 Q9WZJ9]
 +
** [http://www.uniprot.org/uniprot/Q9CED2 Q9CED2]
 +
** [http://www.uniprot.org/uniprot/P43014 P43014]
 +
** [http://www.uniprot.org/uniprot/P46244 P46244]
 +
** [http://www.uniprot.org/uniprot/P75225 P75225]
 +
** [http://www.uniprot.org/uniprot/Q48989 Q48989]
 +
** [http://www.uniprot.org/uniprot/P0A8M3 P0A8M3]
 +
** [http://www.uniprot.org/uniprot/O04630 O04630]
 +
** [http://www.uniprot.org/uniprot/P18255 P18255]
 +
** [http://www.uniprot.org/uniprot/P18256 P18256]
 +
** [http://www.uniprot.org/uniprot/P04801 P04801]
 +
** [http://www.uniprot.org/uniprot/P07236 P07236]
 +
** [http://www.uniprot.org/uniprot/P26639 P26639]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxo-decanoyl-[acyl-carrier protein] synthase|3-oxoacyl-[acyl-carrier-protein] synthase}}
+
{{#set: common-name=threonine-trna ligase}}
−
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
+
{{#set: ec-number=ec-6.1.1.3}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction THREONINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • threonine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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