Difference between revisions of "THREONINE-ALDOLASE-RXN"

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(Created page with "Category:reaction == Reaction SUCCCOASYN-RXN == * direction: ** reversible * common-name: ** succinyl-coa synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.5 e...")
(Created page with "Category:reaction == Reaction RXN-14275 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.m19 ec-1.1.1.m19] == Reaction formula == * 1 ...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SUCCCOASYN-RXN ==
+
== Reaction RXN-14275 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** succinyl-coa synthetase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.5 ec-6.2.1.5]
+
** [http://enzyme.expasy.org/EC/1.1.1.m19 ec-1.1.1.m19]
−
* synonymous:
 
−
** succinate thiokinase
 
−
** succinyl coa synthesis
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
+
* 1 [[CPD-14916]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD0-2106]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21782]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03269]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered):
−
* [[P42-PWY]], incomplete reductive TCA cycle:
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5392]], reductive TCA cycle II:
 
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi):
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5538]], pyruvate fermentation to acetate VI:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5537]], pyruvate fermentation to acetate V:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic):
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I:
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle:
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR118593
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17664 17664]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31196 31196]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04745 R04745]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/O28098 O28098]
+
{{#set: ec-number=ec-1.1.1.m19}}
−
** [http://www.uniprot.org/uniprot/P53594 P53594]
+
{{#set: nb gene associated=0}}
−
** [http://www.uniprot.org/uniprot/O28733 O28733]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P45101 P45101]
+
{{#set: reconstruction category=gap-filling}}
−
** [http://www.uniprot.org/uniprot/P45102 P45102]
+
{{#set: reconstruction tool=meneco}}
−
** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
+
{{#set: reconstruction comment=added for gapfilling}}
−
** [http://www.uniprot.org/uniprot/Q58643 Q58643]
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
** [http://www.uniprot.org/uniprot/O26663 O26663]
 
−
** [http://www.uniprot.org/uniprot/P80886 P80886]
 
−
** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
 
−
** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
 
−
** [http://www.uniprot.org/uniprot/P80865 P80865]
 
−
** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
 
−
** [http://www.uniprot.org/uniprot/O67729 O67729]
 
−
** [http://www.uniprot.org/uniprot/O67546 O67546]
 
−
** [http://www.uniprot.org/uniprot/P53593 P53593]
 
−
** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
 
−
** [http://www.uniprot.org/uniprot/P0A836 P0A836]
 
−
** [http://www.uniprot.org/uniprot/O82662 O82662]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=succinyl-coa synthetase}}
 
−
{{#set: ec-number=ec-6.2.1.5}}
 
−
{{#set: synonymous=succinyl coa synthesis|succinate thiokinase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=12}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 08:32, 15 March 2021

Reaction RXN-14275

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6920, 6-gingerol analog biosynthesis (engineered):
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR118593
  • RHEA:
  • LIGAND-RXN:





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