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| Line 1: |
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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction RXN-9655 == | + | == Reaction TPH == |
| | * direction: | | * direction: |
| | ** left-to-right | | ** left-to-right |
| | * common-name: | | * common-name: |
| − | ** fatty acid synthase | + | ** thymidylate 5'-phosphohydrolase |
| − | ** 3-hydroxydecanoyl-[acp] dehydrase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
| |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
| |
| − | ** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
| |
| − | * synonymous:
| |
| − | ** β-hydroxyacyl-acyl carrier protein dehydratase
| |
| − | ** faba
| |
| − | ** (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
| |
| − | ** hddase
| |
| − | ** β-hydroxydecanoyl thiol ester dehydrase
| |
| − | ** d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
| |
| − | ** β-hydroxyacyl-acp dehydrase
| |
| − | ** β-hydroxydecanoate dehydrase
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c] | + | * 1.0 [[TMP]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 1.0 [[Pi]][c] '''+''' 1.0 [[THYMIDINE]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * Gene: [[SJ04587]] |
| − | * Gene: [[SJ17743]]
| + | ** Category: [[orthology]] |
| − | ** Category: [[annotation]]
| + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ03883]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ06617]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ04769]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ00613]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ00320]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ13014]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ04443]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ10275]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ19629]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ06616]] | |
| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | |
| − | * Gene: [[SJ10624]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ11672]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ15983]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ06944]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ18059]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY0-862]], (5Z)-dodecenoate biosynthesis I:
| |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
| |
| − | ** '''31''' reactions found over '''31''' reactions in the full pathway
| |
| − | * [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase):
| |
| − | ** '''31''' reactions found over '''31''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| | == External links == | | == External links == |
| − | * METANETX-RXN : MNXR122928
| |
| | {{#set: direction=left-to-right}} | | {{#set: direction=left-to-right}} |
| − | {{#set: common-name=3-hydroxydecanoyl-[acp] dehydrase|fatty acid synthase}} | + | {{#set: common-name=thymidylate 5'-phosphohydrolase}} |
| − | {{#set: ec-number=ec-2.3.1.85|ec-4.2.1.59|ec-2.3.1.86}}
| + | {{#set: nb gene associated=1}} |
| − | {{#set: synonymous=β-hydroxyacyl-acyl carrier protein dehydratase|hddase|β-hydroxyacyl-acp dehydrase|β-hydroxydecanoyl thiol ester dehydrase|d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase|faba|β-hydroxydecanoate dehydrase|(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase}}
| + | {{#set: nb pathway associated=0}} |
| − | {{#set: nb gene associated=16}} | + | {{#set: reconstruction category=orthology}} |
| − | {{#set: nb pathway associated=3}} | + | {{#set: reconstruction tool=pantograph}} |
| − | {{#set: reconstruction category=annotation}} | |
| − | {{#set: reconstruction tool=pathwaytools}} | |
| | {{#set: reconstruction comment=n.a}} | | {{#set: reconstruction comment=n.a}} |
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina}} |
